Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1018 ATGTGTAGCGGTTCCGAGGCGAAATGTGCTAGTTCTAGTTTTGTGATGGAAGGTGGATTGAAGCAAGAGAGATTACATAGTAATTTCTCGGTAATGCTTGAATTATCGGCTACTGATAACCTGATTGGGTTTAGGAGTGCTGTGGAGGAAGATGGTCATGATATTGATGAGGTGGGGTTGTGGTATGGGAGAAGGTTCGGTTCAAAAATGATGGGGTTTGAAGAGAGGACTCCTCTTATGGTTGCAGCCATGTATGGGAGCATGGATGTCCTAACTTTTATTATTCACAGCGGTCGTGTTGATGTTAATAGGGCTTGCGGGTCTGATAGCTTAACGGCGCTCCATTGTGCTGTTGCTGGCGGTTCTGCTATTTCAGATCAGGTTGTTAAACTCTTGCTTGACGCGTTTGCTGATGTGAACGCTGTTGATGCCAATGGTAATCGCCCCGGTGATTTCATTGCTCCTGCCTATACTTTAGCCTGCTTCTATTCCAGGAAAAAGGCCTTACAACATCTTTTAAATGGGTGTGCTAACAATGAAGACATACTTGGCTCATCTGAAGGAATATTTTATGAGGGAGAAGGATATGAGCCTCGGGAGCTTTCAACCCCTCGGATCTTGAAAGATGGAACAGAGAAAAAAGAGTATCCAGTTGATCTCTCATTTCCAGACATCAAGAATGAAATATATAGCTCAGATGAGTTTAGAATGTATACCTTCAAGGTTAAACCTTGTACAAGAGCTTACTCCCATGATTGGACAGAGTGTCCATTCGCTCACCCTGGGGAAAATGCAAGGAGGCGGGATCCAAGGAAATACCACTATAGCTGTGTCCCCTGTCCAGAATTTAGAAAAGGCTCGTGTAGGCAGGGAGATTCCTGTGAATATGCCCATGGTATTTTTGAATGTTGGCTTCATCCTGCTCAATATCGTACTCGTCTTTGCAAGGATGAAACTGGATGCAGCAGAAAAGTCTGTTTCTTTGCTCATAAACCAGAAGATCTCCGTCCCCTGTATGCTTCAACAGGTTCTGCTGTACTGTCTCCAGGATCGATGGGCGGTCCTTCACTAGACATTAGATCAATTAGCCCTCTTAACCTTGGTTCTCCTTCCGTCCTTGTACCCTCTGGAGTGTCTTCTCCAATGGGTATGGGTGGAACCATGTGGCAAACTCAATCTAATATTCCACCTCCAACCTTGCAGCTACCAGCTAGCCGGTTGAAGGCTGCTTTGAGTTCTAGAGATATAGATATAGACATCGAGTTTGGATTGGAAAGTCAACAGCGTAGACAGCAACAATTAATGGATGAGATGTCCTGTTTATCCTCACCTTCCAGATGGAACAATGGCTTGCCATCTCCTTTTCCATCCCCTAGGGGTAGGATTGGAGAGTTGAATGGGTTTGGAGGTGTGAGGCCTACTAATCTTGAAGACATTTTTGGGTCTGTAGATCCTGCAATTTTACCTCAATTACAAGGACTTTCACTGGATTCCATGGCATCCCAGGTACAGTCCCCTTCCGGGATTCAGATGCGCCAAAGCCTGAATCATCCTTTCCTTTCAAGCTACCCTAACAGCATTGCATCCCCTCCTGCGAGGTCATCTCAACCATTTGGGGTTGACCAATCCGTGTCTGCAGCCGCAACAGTTCTAAGTTCCAGGTCAGCCGCCTTTGCGAAGCGAAGCCAGAGCTTCAATGAACGTAGTGCGGTGAACCGTCATTCTCGGCTTTCGCCCCCAGCTGCTTCTGCAACTGTCATGCCTTCAAACCTATCTGATTGGGGCTCTCCTGATGGGAAATTAGATTGGGGAATCCATGGAGAAGAACTCAACAAGTTAAGGAAGTCTGCATCTTTCGGGTTTAGAAGCAGCGTTAGTAGTTCTGCAGCACCTGCACTCACAATGCATGTTGGTGCTGCTGCTGATGAGCCAGATGTGTCTTGGGTTCAATCCCATGTGAAGGATACTCCATCCAAGAAGTCTGGGCAGTTCAATTTAGACGAGCAGCAGCGACAACAGCAGCTATGCCATCTTGACAGTGGCGATTTAGAGTTGCTTCCGACATGGGTGGAGCAATTGTACACTGAACAGGAGCAGATGGTTGCTTAA 2109 46.42 MCSGSEAKCASSSFVMEGGLKQERLHSNFSVMLELSATDNLIGFRSAVEEDGHDIDEVGLWYGRRFGSKMMGFEERTPLMVAAMYGSMDVLTFIIHSGRVDVNRACGSDSLTALHCAVAGGSAISDQVVKLLLDAFADVNAVDANGNRPGDFIAPAYTLACFYSRKKALQHLLNGCANNEDILGSSEGIFYEGEGYEPRELSTPRILKDGTEKKEYPVDLSFPDIKNEIYSSDEFRMYTFKVKPCTRAYSHDWTECPFAHPGENARRRDPRKYHYSCVPCPEFRKGSCRQGDSCEYAHGIFECWLHPAQYRTRLCKDETGCSRKVCFFAHKPEDLRPLYASTGSAVLSPGSMGGPSLDIRSISPLNLGSPSVLVPSGVSSPMGMGGTMWQTQSNIPPPTLQLPASRLKAALSSRDIDIDIEFGLESQQRRQQQLMDEMSCLSSPSRWNNGLPSPFPSPRGRIGELNGFGGVRPTNLEDIFGSVDPAILPQLQGLSLDSMASQVQSPSGIQMRQSLNHPFLSSYPNSIASPPARSSQPFGVDQSVSAAATVLSSRSAAFAKRSQSFNERSAVNRHSRLSPPAASATVMPSNLSDWGSPDGKLDWGIHGEELNKLRKSASFGFRSSVSSSAAPALTMHVGAAADEPDVSWVQSHVKDTPSKKSGQFNLDEQQRQQQLCHLDSGDLELLPTWVEQLYTEQEQMVA 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53400203 53402311 - evm.model.ptg000010l.486 HCH2g1018 540243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1018 702 PANTHER UNKEMPT FAMILY MEMBER 57 656 IPR045234 -
HCH2g1018 702 Gene3D - 275 337 - -
HCH2g1018 702 SMART c3hfinal6 274 300 IPR000571 GO:0046872(InterPro)
HCH2g1018 702 SMART c3hfinal6 309 332 IPR000571 GO:0046872(InterPro)
HCH2g1018 702 Gene3D - 50 189 IPR036770 -
HCH2g1018 702 SUPERFAMILY Ankyrin repeat 71 178 IPR036770 -
HCH2g1018 702 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
HCH2g1018 702 MobiDBLite consensus disorder prediction 569 590 - -
HCH2g1018 702 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
HCH2g1018 702 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872(InterPro)
HCH2g1018 702 Pfam Ankyrin repeats (3 copies) 74 143 IPR002110 GO:0005515(InterPro)
HCH2g1018 702 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515(InterPro)
HCH2g1018 702 Pfam CCCH-type zinc finger 279 298 IPR041367 -
HCH2g1018 702 SMART ANK_2a 74 104 IPR002110 GO:0005515(InterPro)
HCH2g1018 702 SMART ANK_2a 109 141 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1018 HCH-Chr2:53400203 HCH8g0682 HCH-Chr8:43524013 3.20E-51 dispersed
HCH6g0358 HCH-Chr6:5775836 HCH2g1018 HCH-Chr2:53400203 2.30E-121 transposed
HCH1g0362 HCH-Chr1:50648123 HCH2g1018 HCH-Chr2:53400203 4.00E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33222 PF12796 Ank_2 2.20E-06 CL0465 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1018 - - - 0.0