Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1033 ATGCCTGCCATTACTCGAGGCAATCACTCTAAAATTGACCATGGAACCGAATTGGACGAGGTCATAACTGTTATATCGAAAAGTAACCAGATCGATGGATCCGTATTGGAATGCACTCCTCGGAAGCGGAAATTGAGATCGGTTGATTCTCCGATGCAACGGAGTCCTGTCTCTAAGCCTATGAGTTGGAAATCGCCTCGCCGAATCCTTAATTCGAGTCCTGAAAGTCCTGCAAATGGCGATGAGAAAGTCTATGATGAAATGTTACCTAAATTACGTAAATCGCCGGTGAAATGCTTGTTCAAGAACTATGTTGCCAAACCAAATTGGAATCCTAAAGTTATGGAGCATATGAAAGTGGCGAAGGAGGCATTGCATGTGTCTACAGCTCCGGCTATAGTTCGATGCCGTGAGGATGAGCATAATAGGATCTTGGACTTTTCCAAGGCTTGTATAGAGCATGAGAAAGCTGGTTGTTTGTATGTATGCGGGTGTCCGGGGACTGGCAAATCTTTGTCTATGGAAAAAGTGAAGCAACAGTTGGCGGCTTGGGTAAGAGAGTCAGATCGCCAATCACCGGATGTTTTGTCAATTAACTGCACGTCTTTAACTAATACATCTGATATCTTCAGTAAGATGGTGGGTGAGATTCAACCACAAAGGAAGACAAATGGCCCTTCAACACCCCTGCAACATCTTCGGCACTTATATTCCCAAAAGCCAGAGTCATCTAGCAAGAAGATGATGCTGATAATAGCTGATGAATTGGATTATTTAATTACTAAGGATAGAGCAGTGCTTCATGATCTATTTATGCTCACTACTTTCCCATTTTCCAGATGCATCTTGATAGGAATTGCTAATGCCATTGACTTGGCCGATCGTTTTCTTCCAAGACTCAAGTCATTGAATTGCAAACCTCAGGTTGTAACTTTTAGGGCTTACTCCAAAGATCATATTCTTAAGATTCTTCAAGAAAGGCTAATCGTGCTTCCTTTCATCATTTTTCAGCCACAAGCACTGGAGCTTTGTGCTAGAAAAGTTGCGGCTGTGTCTGGAGATATGAGAAAAGCTCTCTGTGTATGCAGAAGTGCCATTGAACTGTTAGAGGCAGAATTAAAAGCATCCTCTGAGGAGCCTAATCATGATGAGCTCCATGAAGCCTCTGCACCTGATTTTGTTGGAAGACAAGATCTTGGTATTGTGAGGGTAGATCATATGGCTGTTGCTCTCTCCAAAACATACAGATCGCCAGTTGTGGAAACTATACAATCTCTTCCTCAACATCAACAGATAATCCTATGCTCTGTAGTGAAACTCTTTCGTAGAGGGAAAAAGGATACAACAATGGGGGAGCTAAACAAATCGTATGTAGATATCTGCAAATCATCACTTATCCCACCAGTGGGAACCTTGGAACTTTCAAATATGTACAGAGTGCTAAATGACCAGGGCCTTCTCAAACTCGGTCAGTCTCGAGATGATAAATCAAAGCGAGTTTTGTTGAAAGTTGATGAAGCAGATATCGTGTTTGCATTGCAGGGAATACGCTTCTTTAGAAACTGCCTACAGTAA 1575 42.29 MPAITRGNHSKIDHGTELDEVITVISKSNQIDGSVLECTPRKRKLRSVDSPMQRSPVSKPMSWKSPRRILNSSPESPANGDEKVYDEMLPKLRKSPVKCLFKNYVAKPNWNPKVMEHMKVAKEALHVSTAPAIVRCREDEHNRILDFSKACIEHEKAGCLYVCGCPGTGKSLSMEKVKQQLAAWVRESDRQSPDVLSINCTSLTNTSDIFSKMVGEIQPQRKTNGPSTPLQHLRHLYSQKPESSSKKMMLIIADELDYLITKDRAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLKSLNCKPQVVTFRAYSKDHILKILQERLIVLPFIIFQPQALELCARKVAAVSGDMRKALCVCRSAIELLEAELKASSEEPNHDELHEASAPDFVGRQDLGIVRVDHMAVALSKTYRSPVVETIQSLPQHQQIILCSVVKLFRRGKKDTTMGELNKSYVDICKSSLIPPVGTLELSNMYRVLNDQGLLKLGQSRDDKSKRVLLKVDEADIVFALQGIRFFRNCLQ 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53478693 53482943 - evm.model.ptg000010l.471 HCH2g1033 540258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1033 524 CDD Cdc6_C 427 509 IPR015163 -
HCH2g1033 524 MobiDBLite consensus disorder prediction 42 82 - -
HCH2g1033 524 Gene3D - 305 423 - -
HCH2g1033 524 SMART Cdc6_C_2 434 513 IPR015163 -
HCH2g1033 524 Pfam CDC6, C terminal winged helix domain 421 512 IPR015163 -
HCH2g1033 524 PIRSF Cdc6 4 524 IPR016314 GO:0006270(InterPro)|GO:0051301(InterPro)
HCH2g1033 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 372 IPR027417 -
HCH2g1033 524 SUPERFAMILY Winged helix DNA-binding domain 419 522 IPR036390 -
HCH2g1033 524 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 43 519 IPR050311 GO:0003688(PANTHER)|GO:0005634(PANTHER)|GO:0033314(PANTHER)
HCH2g1033 524 Pfam AAA domain 156 276 IPR049945 GO:0016887(InterPro)
HCH2g1033 524 CDD AAA 137 304 - -
HCH2g1033 524 Pfam Cdc6/ORC-like, ATPase lid domain 315 372 IPR054425 -
HCH2g1033 524 MobiDBLite consensus disorder prediction 51 78 - -
HCH2g1033 524 SMART AAA_5 156 306 IPR003593 GO:0016887(InterPro)
HCH2g1033 524 Gene3D - 114 304 IPR027417 -
HCH2g1033 524 FunFam Cell division control protein 115 303 - -
HCH2g1033 524 FunFam Cell division control protein 426 516 - -
HCH2g1033 524 FunFam Cell division control protein 304 423 - -
HCH2g1033 524 Gene3D - 424 512 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1033 HCH-Chr2:53478693 HCH8g0450 HCH-Chr8:39714692 6.10E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1033 K02213 - csv:101205741 712.22