Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1035 ATGGGATCTAACTTCTCCACCAAATTCATCACTCTTTACCTCTTCCTCCTCCATGTCGGCTGCTTTCTTATAACCGCCACCGACAACCGCCGCCACCGCCGTAACCAACCCTCGAAAAAACGAAGAATTTCACCCATATCAACCGCCGCCGTTCAAACACCGTCATGTCTCAAACCCAATAAAGCTCTTTCCTTTTCCATTTCATTTCTCCGACAAATCTTCTCCTCTAAAACATGCAAAACCGCTATCCAAACCCGACCCTCCACGCCCGCTCGATCCTCACAACATTCCATCGTCACGCTTATTCCACAACCTGATATCCCCTCCTCGGATACTCCGAATAAAACCGCCCCGACATCGACACCGACACCGACACCGACACTGACACCCGAATCCGACATCTCGTCCGAGAATCAGTTCCTCCCTCTACGAAACGATATCTTCCCTTGTACCGTTTGCGGCGAGATTTTCCCGAAACCCCAACTTCTCGAACAACATCAAGCATTGAAACACGCCGTTTCGGAGCTTGCGGATGCCGATTCCGGTAAAAACATTGTACGGATTATATTTGAAACTGGGTGGAGAAGTAAAGAAAAGAATCCCAGGATTCTACGAATCCTTAAAATCCACAACAGTCAGAAGATTCTCTCGAGATTCGAGGAGTACAGAGAGTCCGTGAAAGTTAAAGCGGCGAGAAACGGCGCCGCCGTTAAGAGACGGGACGAGAGGTGTATTGCTGATGGAAACGAGTTATTGAGGTTTCATTGCTCGACGTTCTTGTGTGATTTGGGACTTAACGGGAATTCCACTGTTTGTGGGGGGCAGTTTTGTAATATTTGTGGGATTATCAAATCTGGATTCTCACCCAAGTTGGACGGAATTTCCACGCTATCTAGTAGTTGGAGGGCACACGTGGCGATTCCTGAGGATATTGAAGAGGAATTCAAGTTTATGAATGTGAAGAGAGCGATGCTGGTTTGTCGGGTCGTGGCGGGTCGGGTCGGGTGTGATTCTGAGGAGGATTTGGATAAGGAGGATGGCGGGTTTGATTCGGTTGTGGGAAGGGGTGGGAGTGGGGCCCAGGACGAGGAAGAGCTGTTGGTGTTTAATCCCAGGGCTGTGCTTCCCTGCTTCGCGATTGTATATGAAATTTAA 1155 48.92 MGSNFSTKFITLYLFLLHVGCFLITATDNRRHRRNQPSKKRRISPISTAAVQTPSCLKPNKALSFSISFLRQIFSSKTCKTAIQTRPSTPARSSQHSIVTLIPQPDIPSSDTPNKTAPTSTPTPTPTLTPESDISSENQFLPLRNDIFPCTVCGEIFPKPQLLEQHQALKHAVSELADADSGKNIVRIIFETGWRSKEKNPRILRILKIHNSQKILSRFEEYRESVKVKAARNGAAVKRRDERCIADGNELLRFHCSTFLCDLGLNGNSTVCGGQFCNICGIIKSGFSPKLDGISTLSSSWRAHVAIPEDIEEEFKFMNVKRAMLVCRVVAGRVGCDSEEDLDKEDGGFDSVVGRGGSGAQDEEELLVFNPRAVLPCFAIVYEI 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53499780 53500934 - evm.model.ptg000010l.469 HCH2g1035 540260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1035 384 ProSitePatterns Zinc finger C2H2 type domain signature. 150 171 IPR013087 -
HCH2g1035 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 176 IPR013087 -
HCH2g1035 384 SUPERFAMILY ADP-ribosylation 174 383 - -
HCH2g1035 384 Gene3D - 174 383 - -
HCH2g1035 384 MobiDBLite consensus disorder prediction 102 118 - -
HCH2g1035 384 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 73 382 - -
HCH2g1035 384 MobiDBLite consensus disorder prediction 102 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0851 HCH-Chr14:36342639 HCH2g1035 HCH-Chr2:53499780 9.10E-40 dispersed
HCH2g1035 HCH-Chr2:53499780 HCH6g0724 HCH-Chr6:40770916 1.90E-45 dispersed
HCH2g1035 HCH-Chr2:53499780 HCH12g1145 HCH-Chr12:9199521 5.80E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33223 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1035 - - - 0.0