Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1073 ATGGATCCAAATCTTAATGGGTTCCTTAACCGTACAATGGATTTGAAATCTGAAAATGATATCCTTTTAACCCAGTTAGATCAATTCTCTAGTTTTCCTAATAGTTCAATTGATGGATACGGAATGAATGGTCTAATTTCTCTACCCAAGTCAAATCAATACCTTGAAATTGAAAACAATTTCAAATTCAATGAACCATCTGTGGATAATCCTCACTTTGTTAGGAGTTTCCTTTCCCCTGATAAATTAGACCCTAAAAAGTTCTCTCTTCCATCGAGTGAGAGGCCGGGAATAGAGCCATTTTCTGCGTCGGTACGCGTCGACTCGGACGGGGGCTGGGGCTTGAGTCCTGGTGGTGACTCTTCCTCTGATGAGAATGACTTCAAGGAAACTGTTCTCAAGTATATAGGCCAGATGCTTATGGAAGAGAATATTGAGGAGCAACCGTGTATGTTTTATGATCCTTTGGGACTTGAAGTTACTGAGAAATCATTCTATGATGCTCTTGGTGAGAATTATCCTCCTCCACCCAACCGAGTTTCCCTTGGTCGCGAGAACTCTGATGGCGTTTTTCGTGCAAGTGATGGTGATCATATTGGTAATAATGCTAGTAATGGCACCAAGAATTCTACTGATCTACAGTGGATTCTTGATCCTGTAGAATATAAACCCTCTATACTTCCAACACCTTCTCCTGGTAACTTGTTTCAGTCCAATTTCCAAACTAGTTCTGGAAATCAAAACAGCCTGATTAGTAGTCATGAGCTGGTCAATGAACTTTTCATCTCGCAATATAAAAAAGGGTTAGAGGAGGCTAGTAAGTTTCTTCCAGGAGGTAATCAGTTGAATATTGATCTTGGTAGCAGCGTATTGACCGAAAATGCTTCTAAGGTAATAGATGTAAGAGAGAGGGATATGGAAGGGAATTCTCCAAATGGATCAAAGGGAAGAAAGAATCATGAACGTGAAGATCTTGACTTAGATTCAGAAGAAGGGAGGAGGAACAAGCATGCAGCTGTTTATGCAGATGAGGAAGGATTATCTGACATGTTTGATAAGGTGTTACTACATGATTGTGGAAATGAAGCCTTGAAAAATGAAGGGTGTGAGGACCTGCAGTTAAATGGACAATGTCAAGGATCAATTAGTGTGAAAGCTCCAAAGAAACAGAACAATAGAAAAGATGCTGTGGATTTAAGGAGTCTTCTGATGCAATGCGCTCAAGCTGTGTCTACTGATGATCGTAGGACTGCTTATGAACTACTTAAGCAGATTAGGCTGCATTCCACTCCCTGTGGAGATGGTTCCCAGAGGACGGCCCATATCTTTGCTAATGCTCTCGAGGCTCGCTTGGCTGGCACTGGCAGAGGAACCAAAATCTACTATACTACACTAGCGCAAAGCAAGATTTCAGCTGCTGATATATTGAAAGCTTACCAAACTCACCTTTCATCTTGCCCTTTTAAAAAACTTTCAGTCTTCTTCCTGGTCAAAATGATTTTGAAGGTTGCCGATAAAGCTAAAAGTCTTCATATTGTTGATTTTGGGATTTGCTATGGTTTCCTATGGCCTATGCTAATTCAGTTTCTTTCACAACTACCTGATGGTCCACCCACGCTACGCATTACTGGCATAGAGCTTCCTCAACCAGGATTTCGTCCAGAGGAGAAAATTGATGAGACAGGTCGTCGCTTGGCAAAGTACTGTGAGCGCTTTAAAGTTCCTTTCCAATATCAAGCAATAGCATCACAGAATTGGGAAACTATCAAAATTGAGGACCTCAAGCTTGATAGCAGTGATGTACTGGCTGTGAACTGTTTGCACAGGTTTAAGAACCTACTAGATGAGACAGTTGAGGAAAATAGTCCCAGGGATGCTGTCCTGCATTTAATTAGGAAGATGAATCCAAACATATTCATCCATTCTATTGTTAATGGATCCTACAATTCACCCTTCTTCATAACACGGTTTAAGGAGGCGCTCTTCCACTTCTCTGCTTCATTAGATTCTTTAGATTGCACTGCATCTCTTGAAAGCGAAGAGAGGATGATGATAGAGAGAGAGTTTATTGGGCGACAAGTTATGAATGTAGTAGCATGTGAGGGTATTGGGAGGGTTGAGAGGCCTGAAACCTATAAGCAGTGGCAGATTCGGTGTATGCGGGCTGGTTTCAGGCAGCTTCCTTTGGACCAAGAGATTATGAAAAAATTCAGGTTCAAGCTAAGATCAAATTACCACAAAGATTTTGTACTAGATGAAGAAGGTGGTTGGATGCTTCAGGGATGGAAAGGCCGCATTGTTTACGCTTCTTGTTGTTGGGTCCCGGCATGA 2331 41.57 MDPNLNGFLNRTMDLKSENDILLTQLDQFSSFPNSSIDGYGMNGLISLPKSNQYLEIENNFKFNEPSVDNPHFVRSFLSPDKLDPKKFSLPSSERPGIEPFSASVRVDSDGGWGLSPGGDSSSDENDFKETVLKYIGQMLMEENIEEQPCMFYDPLGLEVTEKSFYDALGENYPPPPNRVSLGRENSDGVFRASDGDHIGNNASNGTKNSTDLQWILDPVEYKPSILPTPSPGNLFQSNFQTSSGNQNSLISSHELVNELFISQYKKGLEEASKFLPGGNQLNIDLGSSVLTENASKVIDVRERDMEGNSPNGSKGRKNHEREDLDLDSEEGRRNKHAAVYADEEGLSDMFDKVLLHDCGNEALKNEGCEDLQLNGQCQGSISVKAPKKQNNRKDAVDLRSLLMQCAQAVSTDDRRTAYELLKQIRLHSTPCGDGSQRTAHIFANALEARLAGTGRGTKIYYTTLAQSKISAADILKAYQTHLSSCPFKKLSVFFLVKMILKVADKAKSLHIVDFGICYGFLWPMLIQFLSQLPDGPPTLRITGIELPQPGFRPEEKIDETGRRLAKYCERFKVPFQYQAIASQNWETIKIEDLKLDSSDVLAVNCLHRFKNLLDETVEENSPRDAVLHLIRKMNPNIFIHSIVNGSYNSPFFITRFKEALFHFSASLDSLDCTASLESEERMMIEREFIGRQVMNVVACEGIGRVERPETYKQWQIRCMRAGFRQLPLDQEIMKKFRFKLRSNYHKDFVLDEEGGWMLQGWKGRIVYASCCWVPA 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53712534 53714864 - evm.model.ptg000010l.431 HCH2g1073 540298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1073 776 MobiDBLite consensus disorder prediction 297 335 - -
HCH2g1073 776 ProSiteProfiles GRAS family profile. 390 774 IPR005202 -
HCH2g1073 776 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 382 773 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH2g1073 776 Pfam GRAS domain family 399 773 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1073 HCH-Chr2:53712534 HCH8g0416 HCH-Chr8:37985110 2.40E-31 dispersed
HCH11g0186 HCH-Chr11:1806500 HCH2g1073 HCH-Chr2:53712534 3.80E-159 wgd
HCH13g0493 HCH-Chr13:3437958 HCH2g1073 HCH-Chr2:53712534 7.20E-163 wgd
HCH2g1073 HCH-Chr2:53712534 HCH3g1373 HCH-Chr3:51501680 6.20E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33226 PF03514 GRAS 6.40E-105 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1073 K27753 - csv:101203568 951.044