Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1077 ATGGCAACTCTCTCTGCCATCTACATTGCCTCTCTCATTTCTCTCCTGTTAGTGGTCGAAGCTAGAATCCCCGGAGTTTACAATGGCAGTCCATGGCAGAACGCGCATGCCACATTCTACGGTGGTTCCGATGCTTCCGGCACTATGGGTGGCGCTTGCGGCTACGGTAACCTATACAGCCAAGGGTATGGCGTGAACACGGCGGCGCTCAGTACGGCTCTGTTCAACAATGGGCAGAGCTGTGGTGCTTGTTTCGAGATTAAATGCGCTAATGATCCGAGGTGGTGCCACTCCGGCAGCCCGTCTATATTAGTCACGGCAACTAACTTCTGCCCGCCGAACTACGCCCTCCCTAATGACAATGGTGGCTGGTGTAACCCTCCCCGTACCCATTTCGACCTCGCCATGCCCATGTTTCTCAAGATTGCTGAGTATCGTGCCGGAATCGTCCCGGTCGCTTACCGCCGAGTGCCATGCCGGAAGCAAGGAGGAATCAGGTTCACAATCAACGGATTCCGTTACTTTAATCTAGTTCTAATCAGCAACGTCGCGGGCGCAGGGGATATTGTGAGGGTGAGCGTAAAAGGGTCAAGAACCGGGTGGATGAGCTTGACCCGGAACTGGGGGCAAAACTGGCAATCCAATGCCGTATTGGTGGGCCAGTCTCTCTCTTTTAGAGTTACGGGCAGTGACCGTCGCACCTCAACGTCGTGGAACATCATCCCCGCTCATTGGCAATTCGGTCAAACTTTCACGGGCAAAAATTTCAGGGTCTAA 777 53.8 MATLSAIYIASLISLLLVVEARIPGVYNGSPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGQSCGACFEIKCANDPRWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRFTINGFRYFNLVLISNVAGAGDIVRVSVKGSRTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIIPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53739421 53740677 + evm.model.ptg000010l.427 HCH2g1077 540302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1077 258 Pfam Lytic transglycolase 67 154 IPR009009 -
HCH2g1077 258 Gene3D - 164 256 IPR036749 -
HCH2g1077 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
HCH2g1077 258 CDD DPBB_EXPA_N 31 159 - -
HCH2g1077 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
HCH2g1077 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
HCH2g1077 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
HCH2g1077 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
HCH2g1077 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
HCH2g1077 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
HCH2g1077 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
HCH2g1077 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
HCH2g1077 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
HCH2g1077 258 FunFam Expansin 164 256 - -
HCH2g1077 258 FunFam Expansin 21 160 - -
HCH2g1077 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
HCH2g1077 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
HCH2g1077 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
HCH2g1077 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
HCH2g1077 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
HCH2g1077 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
HCH2g1077 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
HCH2g1077 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
HCH2g1077 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
HCH2g1077 258 Gene3D - 19 160 IPR036908 -
HCH2g1077 258 PANTHER EXPANSIN-A15 16 256 IPR002963 GO:0009664(InterPro)
HCH2g1077 258 SMART dpbb_1 67 154 IPR007112 -
HCH2g1077 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1077 HCH-Chr2:53739421 HCH4g0896 HCH-Chr4:5762602 2.50E-102 dispersed
HCH10g1076 HCH-Chr10:38470875 HCH2g1077 HCH-Chr2:53739421 1.30E-74 transposed
HCH6g0949 HCH-Chr6:44316205 HCH2g1077 HCH-Chr2:53739421 1.40E-76 transposed
HCH1g0451 HCH-Chr1:53033480 HCH2g1077 HCH-Chr2:53739421 1.70E-135 wgd
HCH13g0492 HCH-Chr13:3426508 HCH2g1077 HCH-Chr2:53739421 4.40E-123 wgd
HCH2g1077 HCH-Chr2:53739421 HCH3g1367 HCH-Chr3:51405928 6.50E-135 wgd
HCH2g1077 HCH-Chr2:53739421 HCH9g0677 HCH-Chr9:4503623 1.40E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1077 - - - 0.0