Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1087 ATGGGTAACGGGATTGGAAAGCTTGGAGTTTGTTTCACCGGCGCCGGAGAAGCTCGTCGGAGACAAGATATATCCGTACTGTTATCAAATCCTCTAGACGAAGGGTTAGGACACTCTTTTTGCTATGTACGGCCAGACCCATTACGTCTTTCTTCATCAAAAGTTCATTCAGAGGAAACTACAACTTTCCGATCAATCTCCGGCGCTTCTGTTAGTGCGAATACATCAACTCCTCTTTCTACTGCTCTTATTGATCTTTATTCTTATAATAGTATTGATAGAGCTGCAGCTTTTGAAAGCTCTACTTCTTTTGCTTCAATTCCTTTACAACCAATCCCTAGAAATATGATTAATTCAGGGCCAATTTATGGAAATGGAATTCCTTGTTCTGGGCCTTTAGAAAGGGGGTTTCTTTCTGGTCCAATTGAAAGAGGGTTTATGTCTGGTCCTTTAGATCGTGGGATGTTTTCGGGTCCTCTTGATAACGTTGGTACTAATGAGTTTCAAAGAAGTTATTCTCATGGGGGTTTTGCTTCTAGATCTGCTGGATCTAGGAAGAACAGATTGATTAGGATTTTGAGAAGTGTTATATCGAAATCGATATCTCGAGGGCAGAATTCGATTGTTGCGCCGATTAAAGCGGTTAAGGAACCGGATTGGATTGTTATGTCTGAGAAGCACAATGAGAATTTGACTGTGAGTAGTTTGAATTTCAGTAGTGAGTGTAGTTTGGAGGATGATGATGCAATGGAGAACCAGAATCTTCAGTGGGCTCAAGGGAAAGCTGGGGAAGATAGAGTTCATGTTGTGGTTTCTGAGGAACACGGTTGGGTTTTTGTTGGGATTTATGATGGATTTAATGGCCCTGATGCTCCTGATTACCTACTGTCTAATTTGTATTCTTTTGTACATAAGGAGCTTAAGGGTTTGCTTTGGGATGAAAAAGTTGATATTGTTGGTGTCGATGCTCCGGTGATGTCTCCGGTTCGATCTGATAATTCTCATTTGGAAATGGGAGATTTCTTAAAGGTTAATGATGGTAGTGATTTGGAGAGGAATAGGGTGTCTAATGCTTGTTCTCAGTGTGTAGAGCCTGAGAATCATCCTTGTGCAAGTGGAAATGGAAATGGAAATTCGGGGTCGAATTCAAGGAGAAGGAAAGGTAAGAATTCGAAAGGAAAGTTTCGAGGAGCTGCTGAGAAGTGGGAGGATAATCAGCGACGGTGGAAGTGCGAATGGGACCGGGAAAGATTAGAACTAGACCGGAGGTTAAAGGAACAACTAAATCAATCTGGGTCACTTGGTTCCAGGTCGATTAATCATTCAGATGTCTTGAAAGCTCTTTCCCAGGCATTGAGGAAGACAGAAGAGGCCTACTTGGATATTGCTGATAAAATGCTTGTGGAAAATCCTGAACTGGCTTTGATGGGGTCTTGTGTGCTTGTGATGCTTATGAAAGGAGACGATGTTTATGTGATGAATGTCGGTGATAGCCGGGCCGTTTTAGCTCAAAAGGCAGAGCCTGACTACTGGCTTGGCAAGATTCGTCAGGATTTGGAAAGGATCAATGAAGAACCATTGCATGACGTTGAAGCATTAGATGGTGATACAACCTTCACATCTACTAACCTTACTGCTTTTCAGCTATCCATGGATCACAGCACAAGCGTTGATGAGGAAGTTCAGAGAATTAAAAATGAACACCCTAATGATGCTGGTGCTGTGATGAATGACCGCGTGAAAGGCTCGTTGAAGGTCACCCGTGCATTTGGTGCTGGTTTTCTCAAACAGCCTAAATGGAACAACGCACTTCTCGAGATGTTCAGAATCGACTACGTCGGGTCCTCCCCATACATCAATTGTTGCCCATCTCTCTACCATCACAGATTAGGCCCAAAAGACAGGTTCTTGATCCTATCATCCGATGGACTTTATCAGTACTTCACAAACGAGGAAGCTGTTTCAGAAGTTGAACTTTTCATCACATTGCAACCTGAAGGAGATCCAGCTCAACATCTTGTTGAACTATTGCTGTTTCGGGCAGCAAAGAGAGCTGGTATGGATTTCCATGAGTTGCTGGAAATACCTCAGGGTGACAGAAGGAAGTACCATGATGATGTTTCCATCATTGTGATTTCATTAGAAGGAAGGATTTGGAGATCTTGTGTATAA 2172 42.63 MGNGIGKLGVCFTGAGEARRRQDISVLLSNPLDEGLGHSFCYVRPDPLRLSSSKVHSEETTTFRSISGASVSANTSTPLSTALIDLYSYNSIDRAAAFESSTSFASIPLQPIPRNMINSGPIYGNGIPCSGPLERGFLSGPIERGFMSGPLDRGMFSGPLDNVGTNEFQRSYSHGGFASRSAGSRKNRLIRILRSVISKSISRGQNSIVAPIKAVKEPDWIVMSEKHNENLTVSSLNFSSECSLEDDDAMENQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSFVHKELKGLLWDEKVDIVGVDAPVMSPVRSDNSHLEMGDFLKVNDGSDLERNRVSNACSQCVEPENHPCASGNGNGNSGSNSRRRKGKNSKGKFRGAAEKWEDNQRRWKCEWDRERLELDRRLKEQLNQSGSLGSRSINHSDVLKALSQALRKTEEAYLDIADKMLVENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEEPLHDVEALDGDTTFTSTNLTAFQLSMDHSTSVDEEVQRIKNEHPNDAGAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGSSPYINCCPSLYHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFITLQPEGDPAQHLVELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53786056 53788992 + evm.model.ptg000010l.417 HCH2g1087 540312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1087 723 PANTHER PROTEIN PHOSPHATASE 2C 238 714 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
HCH2g1087 723 SMART PP2C_4 248 712 IPR001932 -
HCH2g1087 723 MobiDBLite consensus disorder prediction 363 399 - -
HCH2g1087 723 Gene3D - 224 719 IPR036457 -
HCH2g1087 723 CDD PP2Cc 420 714 IPR001932 -
HCH2g1087 723 SUPERFAMILY PP2C-like 261 715 IPR036457 -
HCH2g1087 723 ProSiteProfiles PPM-type phosphatase domain profile. 246 714 IPR001932 -
HCH2g1087 723 Pfam Protein phosphatase 2C 436 507 IPR001932 -
HCH2g1087 723 Pfam Protein phosphatase 2C 543 664 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1087 HCH-Chr2:53786056 HCH7g1094 HCH-Chr7:43516206 1.60E-58 dispersed
HCH6g1098 HCH-Chr6:45624089 HCH2g1087 HCH-Chr2:53786056 1.40E-132 transposed
HCH2g1087 HCH-Chr2:53786056 HCH9g0672 HCH-Chr9:4456440 2.50E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1087 - - - 0.0