Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1089 ATGGCAGATGCAGAGGATATTCAGCCACTTGTTTGCGACAATGGAACAGGAATGGTTAAAGCTGGTTTTGCTGGAGATGATGCTCCTAGGGCTGTGTTTCCTAGTATTGTAGGTCGCCCGCGACATACTGGTGTGATGGTTGGTATGGGCCAAAAGGATGCATATGTTGGTGATGAAGCACAGTCTAAACGTGGTATATTGACTTTGAAATACCCCATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAGAAAATCTGGCATCATACCTTTTACAATGAACTTCGAGTGGCCCCTGAAGAGCACCCTGTCCTACTTACTGAAGCACCTCTAAACCCAAAGGCTAACCGTGAAAAAATGACTCAAATCATGTTTGAGACCTTCAATGCTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGTACAACGGGTATTGTTTTGGATTCTGGAGATGGTGTCAGCCACACTGTCCCCATTTATGAGGGGTATGCTCTTCCCCATGCCATACTTCGTCTCGACCTTGCTGGTCGTGACCTCACAGATGCCCTTATGAAAATCTTGACGGAACGTGGCTATTCCTTCACCACTACAGCTGAGCGTGAAATCGTTAGGGATGTGAAGGAAAAACTAGCATACATAGCCCTTGACTATGAACAAGAACTTGAAACTTCCAAAACTGGTTCCTCTGTTGAGAAGAGTTATGAGCTGCCTGATGGACAGGTTATCACCATTGGTGCAGAACGTTTCAGATGTCCAGAAGTTCTTTTCCAGCCTTCAATGATTGGCATGGAAGCTGCAGGCATCCACGAAACGACATATAACTCCATCATGAAATGTGATGTTGATATCAGGAAGGATTTGTATGGAAATATTGTTCTTAGTGGTGGATCTACCATGTTCCCTGGCATTGCTGACAGAATGAGCAAAGAAATAACTGCTTTAGCCCCTAGCAGCATGAAGATAAAGGTGGTAGCTCCGCCTGAAAGAAAGTACAGTGTCTGGATCGGTGGCTCCATTTTGGCATCACTCAGCACATTTCAGCAGATGTGGATAGCAAAGGCAGAATATGATGAGTCTGGCCCATCTATTGTGCACAGGAAATGCTTCTGA 1134 45.41 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53797478 53799469 - evm.model.ptg000010l.415 HCH2g1089 540314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1089 377 FunFam Actin, muscle 182 273 - -
HCH2g1089 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
HCH2g1089 377 FunFam Actin, alpha skeletal muscle 3 178 - -
HCH2g1089 377 Gene3D Actin; Chain A, domain 4 182 273 - -
HCH2g1089 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
HCH2g1089 377 Gene3D - 140 340 - -
HCH2g1089 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
HCH2g1089 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
HCH2g1089 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
HCH2g1089 377 FunFam Putative actin-related protein 5 341 369 - -
HCH2g1089 377 PRINTS Actin signature 51 62 IPR004000 -
HCH2g1089 377 PRINTS Actin signature 238 254 IPR004000 -
HCH2g1089 377 PRINTS Actin signature 63 85 IPR004000 -
HCH2g1089 377 PRINTS Actin signature 142 161 IPR004000 -
HCH2g1089 377 PRINTS Actin signature 28 37 IPR004000 -
HCH2g1089 377 PRINTS Actin signature 117 130 IPR004000 -
HCH2g1089 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
HCH2g1089 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
HCH2g1089 377 SMART actin_3 7 377 IPR004000 -
HCH2g1089 377 Pfam Actin 5 377 IPR004000 -
HCH2g1089 377 Gene3D - 10 371 - -
HCH2g1089 377 FunFam Major actin 259 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1089 HCH-Chr2:53797478 HCH8g1184 HCH-Chr8:47346384 1.60E-73 dispersed
HCH14g0151 HCH-Chr14:25266856 HCH2g1089 HCH-Chr2:53797478 7.10E-215 transposed
HCH1g1103 HCH-Chr1:58681388 HCH2g1089 HCH-Chr2:53797478 3.90E-60 transposed
HCH2g0230 HCH-Chr2:31635800 HCH2g1089 HCH-Chr2:53797478 7.10E-215 transposed
HCH4g1896 HCH-Chr4:51863146 HCH2g1089 HCH-Chr2:53797478 9.50E-212 transposed
HCH4g1204 HCH-Chr4:8080796 HCH2g1089 HCH-Chr2:53797478 8.60E-53 transposed
HCH1g0460 HCH-Chr1:53127396 HCH2g1089 HCH-Chr2:53797478 3.20E-215 wgd
HCH13g0483 HCH-Chr13:3360530 HCH2g1089 HCH-Chr2:53797478 4.90E-216 wgd
HCH2g1089 HCH-Chr2:53797478 HCH9g0669 HCH-Chr9:4441415 5.80E-217 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1089 K10355 - mdm:103447714 753.821