Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1094 ATGGAAGAAGATGAAAATGGCTGCGCCGCCTCCGGTCAGAGTCTGATCGATTTGGTGAACGATATAGCTTCAATTTCCGATTACAGATATACGATCAGAAAGCTGTATAGTAATTTAGCTAGAAGACTGAAGTTAATGATTCCGATGTTCGAGGAAATGAGAGATATGAAGCAGACGGTGCCTGAAGATACTGCGAAAGCTCTGGTTTCGTTAAAGGAAGCGCTGGAATCGACGAAGGAGTTGCTTAGACGAGGAAGCGAGGGGAGCAAGATTTATCTGGCCCTAGAGAGAGATCAGACCTTGGATAAATACCACGAGGTGACAGAAAGACTAGAGCAAGCTTTGAGTGTAATTTCATATGATAAACTTGACATATCTGATGAAATCAAGGAGCAGGTAGAGCTTGTTCTTTCTCAATTTCAAAGAGCTAAAGGAAGGGTTGATACATCAGATGCTGAGCTATATAATAGTCTCCACTCTCTTTATAACAACAGCAAAGACAAGGCTATCGATCCTTCTGACTTGAAGGATCTGGCTGAAAAGTTGCAATTAGTGGATGTAGGTGATCTTACCCAAGAGTCTATTGCTTTGCATGAAATGGTTTCTGCCACTGATGGAGATCCAGGGGGGAAATTTGAGAGAATGTCCTCACTTTTGAGGAAAATAAAAGATTTTGTGCTAACAGAAAACCCTGAAATTGATGTTCCTTCGAAAGAACAAAGTCTTTACCATAGCGGTGGACAGGTAACCGCTGAGAAGAAGGATATCACCCTTATTATACCTGATGACTTCCGATGTCCCATATCGCTAGAGTTGATGAAGGACCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTTCTTGCATTGAAAAGTGGCTGGAAGCAGGGCATACAACATGCCCCAAGACTCAACAAACCCTAACTAGCAACGTTCGTACACCAAATTATGTATTACGTAGTCTCATAGCTCAATGGTGTGAGGCCAATGGGATTGAACCACCAAAAAGAACCAGCAGCTCTCAGCCCAGTAAACTCACTACTCCTGATGAACGCTCTAGGTATGAAGCTCTACTCCGCAAACTCGCATCTGGTAACATTGAAGACCAGAGATCTGCTGCTAGTGAGATTCGCCTTCTCGCCAAACGCAACACAGATAATCGTGTGGTCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGGCCTCCTTTCAACCTCGGACTCCCTCACTCAAGAACATGCCGTGACAGCATTGCTTAATCTTTCTATATGTGATAATAACAAGAGAAGTATCATGACCTGTAGGGCAGTACCCCGTATAGTGCATGTGCTGAAATGTGGTAGTATGGAAGCACGGGAGAATGCTGCAGCCACCCTTTTCAGTATTTCTGTAGTAGATGAATATAAAGTAACAATCGGTGCATCGGGAGCAATTCCGCCACTCGTTACACTGCTTGGTGAAGGTACTCAAAGGGGGAAGAAAGATGCTGCAACCGCTCTTTTCAACTTGTGCTTCTACCAAGGGAATAAGTTTAAGGCAGTGAGGGCTGGTGTGGTTCCCATACTGATGCAGCTGCTGACAGATCTTAGGATGGGGATGGTAGACGAGTCCCTGGCAATTTTAGCTATACTGGCCAGCAATTCTGAAGGGAAGGCTGCCATCGGAGCCGCAGACGCCGTGCCTGTTTTGGTAGACTTCATTGGGATTGGATCCCCTAGGAACAGAGAGAATGCAGCTGCAGTTTTGGTGCATCTTTGCGCGGGAGACAAACGACATCTCGTGGAGGCAAAAGAGCTCGGGGTGATTGAATTGCTTATAGATATGGCAGAAAATGGCACAGACAGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAGCAGGTTTGTGGAGCAGCAGAAAGAGGTGGAGGCTCAAACTCAGATCCACCCGTTGCTGCCACCACTTTCCACAACAAGCAGCGTTGATAGCTAA 1980 45.51 MEEDENGCAASGQSLIDLVNDIASISDYRYTIRKLYSNLARRLKLMIPMFEEMRDMKQTVPEDTAKALVSLKEALESTKELLRRGSEGSKIYLALERDQTLDKYHEVTERLEQALSVISYDKLDISDEIKEQVELVLSQFQRAKGRVDTSDAELYNSLHSLYNNSKDKAIDPSDLKDLAEKLQLVDVGDLTQESIALHEMVSATDGDPGGKFERMSSLLRKIKDFVLTENPEIDVPSKEQSLYHSGGQVTAEKKDITLIIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHTTCPKTQQTLTSNVRTPNYVLRSLIAQWCEANGIEPPKRTSSSQPSKLTTPDERSRYEALLRKLASGNIEDQRSAASEIRLLAKRNTDNRVVIAEAGAIPLLVGLLSTSDSLTQEHAVTALLNLSICDNNKRSIMTCRAVPRIVHVLKCGSMEARENAAATLFSISVVDEYKVTIGASGAIPPLVTLLGEGTQRGKKDAATALFNLCFYQGNKFKAVRAGVVPILMQLLTDLRMGMVDESLAILAILASNSEGKAAIGAADAVPVLVDFIGIGSPRNRENAAAVLVHLCAGDKRHLVEAKELGVIELLIDMAENGTDRGKRKATQLLDQISRFVEQQKEVEAQTQIHPLLPPLSTTSSVDS 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53820840 53824377 + evm.model.ptg000010l.410 HCH2g1094 540319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1094 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 433 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 FunFam RING-type E3 ubiquitin transferase 8 121 - -
HCH2g1094 659 SUPERFAMILY ARM repeat 356 656 IPR016024 -
HCH2g1094 659 CDD RING-Ubox_PUB 261 310 IPR045210 -
HCH2g1094 659 SUPERFAMILY RING/U-box 254 335 - -
HCH2g1094 659 SMART arm_5 548 588 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 SMART arm_5 384 424 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 SMART arm_5 425 465 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 SMART arm_5 466 506 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 SMART arm_5 507 547 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 SMART arm_5 590 630 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 Gene3D - 13 121 IPR036537 GO:0007166(InterPro)
HCH2g1094 659 Gene3D - 339 533 IPR011989 -
HCH2g1094 659 SMART Ubox_2 263 326 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g1094 659 PANTHER U BOX DOMAIN-CONTAINING 33 628 - -
HCH2g1094 659 Pfam Armadillo/beta-catenin-like repeat 548 588 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 Pfam Armadillo/beta-catenin-like repeat 468 505 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 Pfam Armadillo/beta-catenin-like repeat 384 423 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 FunFam RING-type E3 ubiquitin transferase 339 635 - -
HCH2g1094 659 Pfam U-box domain 260 330 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g1094 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 333 IPR013083 -
HCH2g1094 659 Gene3D - 534 659 IPR011989 -
HCH2g1094 659 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g1094 659 FunFam RING-type E3 ubiquitin transferase 260 333 - -
HCH2g1094 659 CDD MLKL_NTD 39 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1311 HCH-Chr10:45652178 HCH2g1094 HCH-Chr2:53820840 5.50E-66 dispersed
HCH1g0050 HCH-Chr1:4626756 HCH2g1094 HCH-Chr2:53820840 1.20E-65 dispersed
HCH2g1094 HCH-Chr2:53820840 HCH3g0732 HCH-Chr3:5260939 1.00E-51 dispersed
HCH14g0766 HCH-Chr14:35814369 HCH2g1094 HCH-Chr2:53820840 2.90E-13 transposed
HCH1g0691 HCH-Chr1:55765244 HCH2g1094 HCH-Chr2:53820840 2.20E-128 transposed
HCH2g0608 HCH-Chr2:49912466 HCH2g1094 HCH-Chr2:53820840 6.30E-83 transposed
HCH4g0174 HCH-Chr4:1011922 HCH2g1094 HCH-Chr2:53820840 2.50E-06 transposed
HCH4g0587 HCH-Chr4:3869435 HCH2g1094 HCH-Chr2:53820840 5.90E-14 transposed
HCH8g0733 HCH-Chr8:44033057 HCH2g1094 HCH-Chr2:53820840 1.40E-15 transposed
HCH2g1094 HCH-Chr2:53820840 HCH3g1349 HCH-Chr3:51169913 8.40E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1094 K27628 - csv:101221150 967.992