Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g1094 | ATGGAAGAAGATGAAAATGGCTGCGCCGCCTCCGGTCAGAGTCTGATCGATTTGGTGAACGATATAGCTTCAATTTCCGATTACAGATATACGATCAGAAAGCTGTATAGTAATTTAGCTAGAAGACTGAAGTTAATGATTCCGATGTTCGAGGAAATGAGAGATATGAAGCAGACGGTGCCTGAAGATACTGCGAAAGCTCTGGTTTCGTTAAAGGAAGCGCTGGAATCGACGAAGGAGTTGCTTAGACGAGGAAGCGAGGGGAGCAAGATTTATCTGGCCCTAGAGAGAGATCAGACCTTGGATAAATACCACGAGGTGACAGAAAGACTAGAGCAAGCTTTGAGTGTAATTTCATATGATAAACTTGACATATCTGATGAAATCAAGGAGCAGGTAGAGCTTGTTCTTTCTCAATTTCAAAGAGCTAAAGGAAGGGTTGATACATCAGATGCTGAGCTATATAATAGTCTCCACTCTCTTTATAACAACAGCAAAGACAAGGCTATCGATCCTTCTGACTTGAAGGATCTGGCTGAAAAGTTGCAATTAGTGGATGTAGGTGATCTTACCCAAGAGTCTATTGCTTTGCATGAAATGGTTTCTGCCACTGATGGAGATCCAGGGGGGAAATTTGAGAGAATGTCCTCACTTTTGAGGAAAATAAAAGATTTTGTGCTAACAGAAAACCCTGAAATTGATGTTCCTTCGAAAGAACAAAGTCTTTACCATAGCGGTGGACAGGTAACCGCTGAGAAGAAGGATATCACCCTTATTATACCTGATGACTTCCGATGTCCCATATCGCTAGAGTTGATGAAGGACCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTTCTTGCATTGAAAAGTGGCTGGAAGCAGGGCATACAACATGCCCCAAGACTCAACAAACCCTAACTAGCAACGTTCGTACACCAAATTATGTATTACGTAGTCTCATAGCTCAATGGTGTGAGGCCAATGGGATTGAACCACCAAAAAGAACCAGCAGCTCTCAGCCCAGTAAACTCACTACTCCTGATGAACGCTCTAGGTATGAAGCTCTACTCCGCAAACTCGCATCTGGTAACATTGAAGACCAGAGATCTGCTGCTAGTGAGATTCGCCTTCTCGCCAAACGCAACACAGATAATCGTGTGGTCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGGCCTCCTTTCAACCTCGGACTCCCTCACTCAAGAACATGCCGTGACAGCATTGCTTAATCTTTCTATATGTGATAATAACAAGAGAAGTATCATGACCTGTAGGGCAGTACCCCGTATAGTGCATGTGCTGAAATGTGGTAGTATGGAAGCACGGGAGAATGCTGCAGCCACCCTTTTCAGTATTTCTGTAGTAGATGAATATAAAGTAACAATCGGTGCATCGGGAGCAATTCCGCCACTCGTTACACTGCTTGGTGAAGGTACTCAAAGGGGGAAGAAAGATGCTGCAACCGCTCTTTTCAACTTGTGCTTCTACCAAGGGAATAAGTTTAAGGCAGTGAGGGCTGGTGTGGTTCCCATACTGATGCAGCTGCTGACAGATCTTAGGATGGGGATGGTAGACGAGTCCCTGGCAATTTTAGCTATACTGGCCAGCAATTCTGAAGGGAAGGCTGCCATCGGAGCCGCAGACGCCGTGCCTGTTTTGGTAGACTTCATTGGGATTGGATCCCCTAGGAACAGAGAGAATGCAGCTGCAGTTTTGGTGCATCTTTGCGCGGGAGACAAACGACATCTCGTGGAGGCAAAAGAGCTCGGGGTGATTGAATTGCTTATAGATATGGCAGAAAATGGCACAGACAGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAGCAGGTTTGTGGAGCAGCAGAAAGAGGTGGAGGCTCAAACTCAGATCCACCCGTTGCTGCCACCACTTTCCACAACAAGCAGCGTTGATAGCTAA | 1980 | 45.51 | MEEDENGCAASGQSLIDLVNDIASISDYRYTIRKLYSNLARRLKLMIPMFEEMRDMKQTVPEDTAKALVSLKEALESTKELLRRGSEGSKIYLALERDQTLDKYHEVTERLEQALSVISYDKLDISDEIKEQVELVLSQFQRAKGRVDTSDAELYNSLHSLYNNSKDKAIDPSDLKDLAEKLQLVDVGDLTQESIALHEMVSATDGDPGGKFERMSSLLRKIKDFVLTENPEIDVPSKEQSLYHSGGQVTAEKKDITLIIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHTTCPKTQQTLTSNVRTPNYVLRSLIAQWCEANGIEPPKRTSSSQPSKLTTPDERSRYEALLRKLASGNIEDQRSAASEIRLLAKRNTDNRVVIAEAGAIPLLVGLLSTSDSLTQEHAVTALLNLSICDNNKRSIMTCRAVPRIVHVLKCGSMEARENAAATLFSISVVDEYKVTIGASGAIPPLVTLLGEGTQRGKKDAATALFNLCFYQGNKFKAVRAGVVPILMQLLTDLRMGMVDESLAILAILASNSEGKAAIGAADAVPVLVDFIGIGSPRNRENAAAVLVHLCAGDKRHLVEAKELGVIELLIDMAENGTDRGKRKATQLLDQISRFVEQQKEVEAQTQIHPLLPPLSTTSSVDS | 659 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 53820840 | 53824377 | + | evm.model.ptg000010l.410 | HCH2g1094 | 540319 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g1094 | 659 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 395 | 433 | IPR000225 | GO:0005515(InterPro) | |
HCH2g1094 | 659 | FunFam | RING-type E3 ubiquitin transferase | 8 | 121 | - | - | |
HCH2g1094 | 659 | SUPERFAMILY | ARM repeat | 356 | 656 | IPR016024 | - | |
HCH2g1094 | 659 | CDD | RING-Ubox_PUB | 261 | 310 | IPR045210 | - | |
HCH2g1094 | 659 | SUPERFAMILY | RING/U-box | 254 | 335 | - | - | |
HCH2g1094 | 659 | SMART | arm_5 | 548 | 588 | IPR000225 | GO:0005515(InterPro) | |
HCH2g1094 | 659 | SMART | arm_5 | 384 | 424 | IPR000225 | GO:0005515(InterPro) | |
HCH2g1094 | 659 | SMART | arm_5 | 425 | 465 | IPR000225 | GO:0005515(InterPro) | |
HCH2g1094 | 659 | SMART | arm_5 | 466 | 506 | IPR000225 | GO:0005515(InterPro) | |
HCH2g1094 | 659 | SMART | arm_5 | 507 | 547 | IPR000225 | GO:0005515(InterPro) | |
HCH2g1094 | 659 | SMART | arm_5 | 590 | 630 | IPR000225 | GO:0005515(InterPro) | |
HCH2g1094 | 659 | Gene3D | - | 13 | 121 | IPR036537 | GO:0007166(InterPro) | |
HCH2g1094 | 659 | Gene3D | - | 339 | 533 | IPR011989 | - | |
HCH2g1094 | 659 | SMART | Ubox_2 | 263 | 326 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH2g1094 | 659 | PANTHER | U BOX DOMAIN-CONTAINING | 33 | 628 | - | - | |
HCH2g1094 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 548 | 588 | IPR000225 | GO:0005515(InterPro) | |
HCH2g1094 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 468 | 505 | IPR000225 | GO:0005515(InterPro) | |
HCH2g1094 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 384 | 423 | IPR000225 | GO:0005515(InterPro) | |
HCH2g1094 | 659 | FunFam | RING-type E3 ubiquitin transferase | 339 | 635 | - | - | |
HCH2g1094 | 659 | Pfam | U-box domain | 260 | 330 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH2g1094 | 659 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 333 | IPR013083 | - | |
HCH2g1094 | 659 | Gene3D | - | 534 | 659 | IPR011989 | - | |
HCH2g1094 | 659 | ProSiteProfiles | U-box domain profile. | 259 | 333 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
HCH2g1094 | 659 | FunFam | RING-type E3 ubiquitin transferase | 260 | 333 | - | - | |
HCH2g1094 | 659 | CDD | MLKL_NTD | 39 | 141 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1311 | HCH-Chr10:45652178 | HCH2g1094 | HCH-Chr2:53820840 | 5.50E-66 | dispersed | |
HCH1g0050 | HCH-Chr1:4626756 | HCH2g1094 | HCH-Chr2:53820840 | 1.20E-65 | dispersed | |
HCH2g1094 | HCH-Chr2:53820840 | HCH3g0732 | HCH-Chr3:5260939 | 1.00E-51 | dispersed | |
HCH14g0766 | HCH-Chr14:35814369 | HCH2g1094 | HCH-Chr2:53820840 | 2.90E-13 | transposed | |
HCH1g0691 | HCH-Chr1:55765244 | HCH2g1094 | HCH-Chr2:53820840 | 2.20E-128 | transposed | |
HCH2g0608 | HCH-Chr2:49912466 | HCH2g1094 | HCH-Chr2:53820840 | 6.30E-83 | transposed | |
HCH4g0174 | HCH-Chr4:1011922 | HCH2g1094 | HCH-Chr2:53820840 | 2.50E-06 | transposed | |
HCH4g0587 | HCH-Chr4:3869435 | HCH2g1094 | HCH-Chr2:53820840 | 5.90E-14 | transposed | |
HCH8g0733 | HCH-Chr8:44033057 | HCH2g1094 | HCH-Chr2:53820840 | 1.40E-15 | transposed | |
HCH2g1094 | HCH-Chr2:53820840 | HCH3g1349 | HCH-Chr3:51169913 | 8.40E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH2g1094 | K27628 | - | csv:101221150 | 967.992 |