Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1094 ATGGAAGAAGATGAAAATGGCTGCGCCGCCTCCGGTCAGAGTCTGATCGATTTGGTGAACGATATAGCTTCAATTTCCGATTACAGATATACGATCAGAAAGCTGTATAGTAATTTAGCTAGAAGACTGAAGTTAATGATTCCGATGTTCGAGGAAATGAGAGATATGAAGCAGACGGTGCCTGAAGATACTGCGAAAGCTCTGGTTTCGTTAAAGGAAGCGCTGGAATCGACGAAGGAGTTGCTTAGACGAGGAAGCGAGGGGAGCAAGATTTATCTGGCCCTAGAGAGAGATCAGACCTTGGATAAATACCACGAGGTGACAGAAAGACTAGAGCAAGCTTTGAGTGTAATTTCATATGATAAACTTGACATATCTGATGAAATCAAGGAGCAGGTAGAGCTTGTTCTTTCTCAATTTCAAAGAGCTAAAGGAAGGGTTGATACATCAGATGCTGAGCTATATAATAGTCTCCACTCTCTTTATAACAACAGCAAAGACAAGGCTATCGATCCTTCTGACTTGAAGGATCTGGCTGAAAAGTTGCAATTAGTGGATGTAGGTGATCTTACCCAAGAGTCTATTGCTTTGCATGAAATGGTTTCTGCCACTGATGGAGATCCAGGGGGGAAATTTGAGAGAATGTCCTCACTTTTGAGGAAAATAAAAGATTTTGTGCTAACAGAAAACCCTGAAATTGATGTTCCTTCGAAAGAACAAAGTCTTTACCATAGCGGTGGACAGGTAACCGCTGAGAAGAAGGATATCACCCTTATTATACCTGATGACTTCCGATGTCCCATATCGCTAGAGTTGATGAAGGACCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTTCTTGCATTGAAAAGTGGCTGGAAGCAGGGCATACAACATGCCCCAAGACTCAACAAACCCTAACTAGCAACGTTCGTACACCAAATTATGTATTACGTAGTCTCATAGCTCAATGGTGTGAGGCCAATGGGATTGAACCACCAAAAAGAACCAGCAGCTCTCAGCCCAGTAAACTCACTACTCCTGATGAACGCTCTAGGTATGAAGCTCTACTCCGCAAACTCGCATCTGGTAACATTGAAGACCAGAGATCTGCTGCTAGTGAGATTCGCCTTCTCGCCAAACGCAACACAGATAATCGTGTGGTCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGGCCTCCTTTCAACCTCGGACTCCCTCACTCAAGAACATGCCGTGACAGCATTGCTTAATCTTTCTATATGTGATAATAACAAGAGAAGTATCATGACCTGTAGGGCAGTACCCCGTATAGTGCATGTGCTGAAATGTGGTAGTATGGAAGCACGGGAGAATGCTGCAGCCACCCTTTTCAGTATTTCTGTAGTAGATGAATATAAAGTAACAATCGGTGCATCGGGAGCAATTCCGCCACTCGTTACACTGCTTGGTGAAGGTACTCAAAGGGGGAAGAAAGATGCTGCAACCGCTCTTTTCAACTTGTGCTTCTACCAAGGGAATAAGTTTAAGGCAGTGAGGGCTGGTGTGGTTCCCATACTGATGCAGCTGCTGACAGATCTTAGGATGGGGATGGTAGACGAGTCCCTGGCAATTTTAGCTATACTGGCCAGCAATTCTGAAGGGAAGGCTGCCATCGGAGCCGCAGACGCCGTGCCTGTTTTGGTAGACTTCATTGGGATTGGATCCCCTAGGAACAGAGAGAATGCAGCTGCAGTTTTGGTGCATCTTTGCGCGGGAGACAAACGACATCTCGTGGAGGCAAAAGAGCTCGGGGTGATTGAATTGCTTATAGATATGGCAGAAAATGGCACAGACAGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAGCAGGTTTGTGGAGCAGCAGAAAGAGGTGGAGGCTCAAACTCAGATCCACCCGTTGCTGCCACCACTTTCCACAACAAGCAGCGTTGATAGCTAA 1980 45.51 MEEDENGCAASGQSLIDLVNDIASISDYRYTIRKLYSNLARRLKLMIPMFEEMRDMKQTVPEDTAKALVSLKEALESTKELLRRGSEGSKIYLALERDQTLDKYHEVTERLEQALSVISYDKLDISDEIKEQVELVLSQFQRAKGRVDTSDAELYNSLHSLYNNSKDKAIDPSDLKDLAEKLQLVDVGDLTQESIALHEMVSATDGDPGGKFERMSSLLRKIKDFVLTENPEIDVPSKEQSLYHSGGQVTAEKKDITLIIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHTTCPKTQQTLTSNVRTPNYVLRSLIAQWCEANGIEPPKRTSSSQPSKLTTPDERSRYEALLRKLASGNIEDQRSAASEIRLLAKRNTDNRVVIAEAGAIPLLVGLLSTSDSLTQEHAVTALLNLSICDNNKRSIMTCRAVPRIVHVLKCGSMEARENAAATLFSISVVDEYKVTIGASGAIPPLVTLLGEGTQRGKKDAATALFNLCFYQGNKFKAVRAGVVPILMQLLTDLRMGMVDESLAILAILASNSEGKAAIGAADAVPVLVDFIGIGSPRNRENAAAVLVHLCAGDKRHLVEAKELGVIELLIDMAENGTDRGKRKATQLLDQISRFVEQQKEVEAQTQIHPLLPPLSTTSSVDS 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53820840 53824377 + evm.model.ptg000010l.410 HCH2g1094 540319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1094 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 433 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 FunFam RING-type E3 ubiquitin transferase 8 121 - -
HCH2g1094 659 SUPERFAMILY ARM repeat 356 656 IPR016024 -
HCH2g1094 659 CDD RING-Ubox_PUB 261 310 IPR045210 -
HCH2g1094 659 SUPERFAMILY RING/U-box 254 335 - -
HCH2g1094 659 SMART arm_5 548 588 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 SMART arm_5 384 424 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 SMART arm_5 425 465 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 SMART arm_5 466 506 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 SMART arm_5 507 547 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 SMART arm_5 590 630 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 Gene3D - 13 121 IPR036537 GO:0007166(InterPro)
HCH2g1094 659 Gene3D - 339 533 IPR011989 -
HCH2g1094 659 SMART Ubox_2 263 326 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g1094 659 PANTHER U BOX DOMAIN-CONTAINING 33 628 - -
HCH2g1094 659 Pfam Armadillo/beta-catenin-like repeat 548 588 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 Pfam Armadillo/beta-catenin-like repeat 468 505 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 Pfam Armadillo/beta-catenin-like repeat 384 423 IPR000225 GO:0005515(InterPro)
HCH2g1094 659 FunFam RING-type E3 ubiquitin transferase 339 635 - -
HCH2g1094 659 Pfam U-box domain 260 330 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g1094 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 333 IPR013083 -
HCH2g1094 659 Gene3D - 534 659 IPR011989 -
HCH2g1094 659 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH2g1094 659 FunFam RING-type E3 ubiquitin transferase 260 333 - -
HCH2g1094 659 CDD MLKL_NTD 39 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1094 K27628 - - csv:101221150 967.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1311 HCH-Chr10:45652178 HCH2g1094 HCH-Chr2:53820840 5.50E-66 dispersed
HCH1g0050 HCH-Chr1:4626756 HCH2g1094 HCH-Chr2:53820840 1.20E-65 dispersed
HCH2g1094 HCH-Chr2:53820840 HCH3g0732 HCH-Chr3:5260939 1.00E-51 dispersed
HCH14g0766 HCH-Chr14:35814369 HCH2g1094 HCH-Chr2:53820840 2.90E-13 transposed
HCH1g0691 HCH-Chr1:55765244 HCH2g1094 HCH-Chr2:53820840 2.20E-128 transposed
HCH2g0608 HCH-Chr2:49912466 HCH2g1094 HCH-Chr2:53820840 6.30E-83 transposed
HCH4g0174 HCH-Chr4:1011922 HCH2g1094 HCH-Chr2:53820840 2.50E-06 transposed
HCH4g0587 HCH-Chr4:3869435 HCH2g1094 HCH-Chr2:53820840 5.90E-14 transposed
HCH8g0733 HCH-Chr8:44033057 HCH2g1094 HCH-Chr2:53820840 1.40E-15 transposed
HCH2g1094 HCH-Chr2:53820840 HCH3g1349 HCH-Chr3:51169913 8.40E-163 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0270 . 1 1039 U-box Gene Family AT5G15400 75.0 0.0e+00 1534.2
HCH2g0003 . 1 834 U-box Gene Family AT5G67340 50.2 1.9e-128 456.8
HCH2g0003 . 196 834 U-box Gene Family AT2G23140 65.4 4.1e-122 435.6
HCH4g0103 . 1 765 U-box Gene Family AT1G24330 59.8 3.4e-248 854.7
HCH1g1136 . 1 756 U-box Gene Family AT1G24330 58.2 4.8e-234 807.7
HCH4g0103 . 1 764 U-box Gene Family AT1G67530 59.6 6.5e-247 850.5
HCH1g1136 . 1 762 U-box Gene Family AT1G67530 58.4 1.7e-231 799.3
HCH14g0857 . 8 367 U-box Gene Family AT4G21350 61.8 2.1e-118 422.5
HCH5g0206 . 134 456 U-box Gene Family AT3G07360 56.7 3.6e-82 302.0
HCH1g0050 . 233 447 U-box Gene Family AT1G71020 65.8 8.8e-77 284.6
HCH10g1311 . 266 454 U-box Gene Family AT1G71020 59.4 1.1e-55 214.5
HCH2g1094 . 253 433 U-box Gene Family AT1G71020 58.3 2.2e-51 200.3
HCH1g0691 . 251 418 U-box Gene Family AT1G71020 60.2 7.0e-50 195.3
HCH3g1349 . 258 430 U-box Gene Family AT1G71020 58.0 2.7e-49 193.4
HCH1g0050 . 20 651 U-box Gene Family AT1G23030 58.0 1.4e-111 400.6
HCH10g1311 . 19 650 U-box Gene Family AT1G23030 55.5 1.2e-99 360.9
HCH2g1094 . 95 637 U-box Gene Family AT2G28830 53.2 4.4e-107 385.6
HCH3g1349 . 92 638 U-box Gene Family AT2G28830 59.0 2.0e-99 360.1
HCH2g1094 . 1 637 U-box Gene Family AT3G46510 67.7 9.3e-170 594.0
HCH3g1349 . 1 637 U-box Gene Family AT3G46510 67.2 5.6e-159 558.1
HCH1g0691 . 15 625 U-box Gene Family AT3G46510 58.5 4.2e-122 435.6
HCH1g0691 . 11 626 U-box Gene Family AT3G54850 69.0 9.2e-167 583.9
HCH2g1094 . 15 644 U-box Gene Family AT3G54850 56.2 2.7e-118 422.9
HCH2g0608 . 77 628 U-box Gene Family AT5G42340 65.8 5.0e-131 465.3
HCH9g0828 . 1 679 U-box Gene Family AT5G01830 57.0 4.2e-202 701.4
HCH3g0732 . 1 714 U-box Gene Family AT1G29340 69.2 3.9e-254 874.4
HCH11g0480 . 2 407 U-box Gene Family AT3G52450 57.5 5.8e-136 481.1
HCH9g1187 . 4 416 U-box Gene Family AT3G52450 55.3 4.0e-129 458.4
HCH11g0480 . 2 407 U-box Gene Family AT2G35930 59.3 7.1e-136 480.7
HCH9g1187 . 2 415 U-box Gene Family AT2G35930 54.6 4.8e-124 441.4
HCH11g0896 . 1 427 U-box Gene Family AT3G19380 62.7 1.2e-143 506.5
HCH11g0896 . 1 427 U-box Gene Family AT1G49780 63.6 1.5e-149 526.2
HCH2g0197 . 1 411 U-box Gene Family AT5G64660 52.8 3.6e-111 398.7
HCH2g0197 . 1 411 U-box Gene Family AT5G09800 51.7 9.4e-104 374.0
HCH2g0197 . 7 411 U-box Gene Family AT3G18710 50.1 1.2e-98 357.1
HCH12g0544 . 1 451 U-box Gene Family AT3G49810 67.8 5.9e-168 587.4
HCH4g0575 . 1 394 U-box Gene Family AT3G49810 65.5 1.1e-142 503.4
HCH12g0544 . 1 451 U-box Gene Family AT5G65920 66.2 1.1e-161 566.6
HCH4g0575 . 1 394 U-box Gene Family AT5G65920 66.0 3.6e-141 498.4
HCH13g1129 . 89 610 U-box Gene Family AT2G45910 54.7 1.6e-155 547.0
HCH5g0667 . 25 822 U-box Gene Family AT4G25160 51.4 4.5e-222 768.1
HCH4g0858 . 34 843 U-box Gene Family AT1G76390 62.0 3.3e-278 954.5
HCH4g0858 . 42 841 U-box Gene Family AT1G20780 62.6 4.7e-285 977.2
HCH4g0103 . 1 767 U-box Gene Family AT1G27910 63.4 5.8e-272 933.7
HCH1g1136 . 1 765 U-box Gene Family AT1G27910 63.2 1.4e-262 902.5
HCH14g0364 . 1 592 U-box Gene Family AT5G67530 75.0 5.8e-264 906.7
HCH7g1556 . 3 157 U-box Gene Family AT5G67530 53.5 2.9e-45 180.3
HCH5g0667 . 12 822 U-box Gene Family AT5G61550 50.2 4.9e-224 774.6
HCH7g1364 . 1 518 U-box Gene Family AT1G04510 74.7 3.6e-225 777.7
HCH7g1364 . 1 485 U-box Gene Family AT2G33340 74.7 1.9e-212 735.3
HCH5g0205 . 5 273 U-box Gene Family AT3G07370 66.2 2.5e-100 362.1
HCH9g0270 . 1 1039 U-box Gene Family AT5G15400 75.0 0.0e+00 1534.2
HCH2g0003 . 1 834 U-box Gene Family AT5G67340 50.2 1.9e-128 456.8
HCH2g0003 . 196 834 U-box Gene Family AT2G23140 65.4 4.1e-122 435.6
HCH4g0103 . 1 765 U-box Gene Family AT1G24330 59.8 3.4e-248 854.7
HCH1g1136 . 1 756 U-box Gene Family AT1G24330 58.2 4.8e-234 807.7
HCH4g0103 . 1 764 U-box Gene Family AT1G67530 59.6 6.5e-247 850.5
HCH1g1136 . 1 762 U-box Gene Family AT1G67530 58.4 1.7e-231 799.3
HCH14g0857 . 8 367 U-box Gene Family AT4G21350 61.8 2.1e-118 422.5
HCH5g0206 . 134 456 U-box Gene Family AT3G07360 56.7 3.6e-82 302.0
HCH1g0050 . 233 447 U-box Gene Family AT1G71020 65.8 8.8e-77 284.6
HCH10g1311 . 266 454 U-box Gene Family AT1G71020 59.4 1.1e-55 214.5
HCH2g1094 . 253 433 U-box Gene Family AT1G71020 58.3 2.2e-51 200.3
HCH1g0691 . 251 418 U-box Gene Family AT1G71020 60.2 7.0e-50 195.3
HCH3g1349 . 258 430 U-box Gene Family AT1G71020 58.0 2.7e-49 193.4
HCH1g0050 . 20 651 U-box Gene Family AT1G23030 58.0 1.4e-111 400.6
HCH10g1311 . 19 650 U-box Gene Family AT1G23030 55.5 1.2e-99 360.9
HCH2g1094 . 95 637 U-box Gene Family AT2G28830 53.2 4.4e-107 385.6
HCH3g1349 . 92 638 U-box Gene Family AT2G28830 59.0 2.0e-99 360.1
HCH2g1094 . 1 637 U-box Gene Family AT3G46510 67.7 9.3e-170 594.0
HCH3g1349 . 1 637 U-box Gene Family AT3G46510 67.2 5.6e-159 558.1
HCH1g0691 . 15 625 U-box Gene Family AT3G46510 58.5 4.2e-122 435.6
HCH1g0691 . 11 626 U-box Gene Family AT3G54850 69.0 9.2e-167 583.9
HCH2g1094 . 15 644 U-box Gene Family AT3G54850 56.2 2.7e-118 422.9
HCH2g0608 . 77 628 U-box Gene Family AT5G42340 65.8 5.0e-131 465.3
HCH9g0828 . 1 679 U-box Gene Family AT5G01830 57.0 4.2e-202 701.4
HCH3g0732 . 1 714 U-box Gene Family AT1G29340 69.2 3.9e-254 874.4
HCH11g0480 . 2 407 U-box Gene Family AT3G52450 57.5 5.8e-136 481.1
HCH9g1187 . 4 416 U-box Gene Family AT3G52450 55.3 4.0e-129 458.4
HCH11g0480 . 2 407 U-box Gene Family AT2G35930 59.3 7.1e-136 480.7
HCH9g1187 . 2 415 U-box Gene Family AT2G35930 54.6 4.8e-124 441.4
HCH11g0896 . 1 427 U-box Gene Family AT3G19380 62.7 1.2e-143 506.5
HCH11g0896 . 1 427 U-box Gene Family AT1G49780 63.6 1.5e-149 526.2
HCH2g0197 . 1 411 U-box Gene Family AT5G64660 52.8 3.6e-111 398.7
HCH2g0197 . 1 411 U-box Gene Family AT5G09800 51.7 9.4e-104 374.0
HCH2g0197 . 7 411 U-box Gene Family AT3G18710 50.1 1.2e-98 357.1
HCH12g0544 . 1 451 U-box Gene Family AT3G49810 67.8 5.9e-168 587.4
HCH4g0575 . 1 394 U-box Gene Family AT3G49810 65.5 1.1e-142 503.4
HCH12g0544 . 1 451 U-box Gene Family AT5G65920 66.2 1.1e-161 566.6
HCH4g0575 . 1 394 U-box Gene Family AT5G65920 66.0 3.6e-141 498.4
HCH13g1129 . 89 610 U-box Gene Family AT2G45910 54.7 1.6e-155 547.0
HCH5g0667 . 25 822 U-box Gene Family AT4G25160 51.4 4.5e-222 768.1
HCH4g0858 . 34 843 U-box Gene Family AT1G76390 62.0 3.3e-278 954.5
HCH4g0858 . 42 841 U-box Gene Family AT1G20780 62.6 4.7e-285 977.2
HCH4g0103 . 1 767 U-box Gene Family AT1G27910 63.4 5.8e-272 933.7
HCH1g1136 . 1 765 U-box Gene Family AT1G27910 63.2 1.4e-262 902.5
HCH14g0364 . 1 592 U-box Gene Family AT5G67530 75.0 5.8e-264 906.7
HCH7g1556 . 3 157 U-box Gene Family AT5G67530 53.5 2.9e-45 180.3
HCH5g0667 . 12 822 U-box Gene Family AT5G61550 50.2 4.9e-224 774.6
HCH7g1364 . 1 518 U-box Gene Family AT1G04510 74.7 3.6e-225 777.7
HCH7g1364 . 1 485 U-box Gene Family AT2G33340 74.7 1.9e-212 735.3
HCH5g0205 . 5 273 U-box Gene Family AT3G07370 66.2 2.5e-100 362.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013844 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 0 25