Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1111 ATGAACAAAGGTTTTTGGATGACAAAGGGTCCCGTGCATGATGCAAATTCAACTTTTGACAGCCCTTCGATAATAAACCCAAAGCGGCCACACCTCTGGTTTATAGATGGTTCTGAGAAACAGATGTTCCCCAACAAGAAGCAAGCTATTCAAGCTCCAAATAGCAAAATGACTGGAGGGTTGTCAAATGTAAATATAGTTCCTTGGGAGAATACTGCTGATTACCAGTCTGTTCAAAATCAATTTATTGGCCGCTTATTTGGATCTGAATCAGTGAGGACCACTGACTTTGCTCACAGGAACACATCTTCTGTTGTTACTGATAGGTTGAATCTCAGGAGAAAAGGGATTGAAGACCAATTTGGAGAGGATGCGGCTGTTGGGCTGTCTATATCTCATGCTATGGAGGTTCCTGAACCATCTCTTAGCTGTGGAGGAGTTGAAAAGGTGAAAATTAATCAGGTTAAAGATAACATACATGGTTTGCAAGCATCTTTAATAGATAAATCTGATAGGGGAACTGGTGGTCAACTATCCCTAGAAGGTTACTATAAAGAAATTGAAAATGGCCTTGTATCGGTGGGATCGGCCTATATTAAGGAGGATGACAGCTTCAATTTGACCGGTCAGACCTCTGACCATGGGGATAACCACATTAGGTTACTACGTCCTAGTGGGAGGATAAACGACAATGTTATATCCATAGGTGATGATTACAACAAAGGGGATAGAAATGTAATTTCATTTGGTGGTTTTCCTGATGAACAAGGTATTATCCCATTAGCTAGTTCTCTTGGAAGCCACGATCCAACGTTCTATGAATCTTCATTCGAAGTGTCTGAAGCTGCTGGTGTCAAAGGGTTGGAATCATCAAATTTTGATTTAGCTGTAAACAGTACCCATATAACTAGGCTAAAGCATGATATAACGTCGAAGAGTAGAACGGAATACAAAATAAGGAAAGAGGCTCCGAACAGCTTCCCCTCAAATGTTAGAAGTTTGATATCCACAGGAATGCTTGATGGTGTTCCTGTGAAGTACGTCTCCTTGGCCAGAGAGGAGCTTCGTGGAATTATAAAGGGATCTGGCTATCTCTGTGGGTGCCAATCCTGCAATTTTTCCAAGATGCTTAATGCCTATGAGTTTGAGCGACATGCTGGCTGCAAGACGAAACACCCAAATAATCACATATACTTTGAGAATGGGAAGACGATTTACCAAATAGTACAAGAATTGAGGAGCACTCCAGAGAGCTTGTTGTTTGATACAATTCAAACTATCTTCGGTGCACCTATCAACCAGAAATCTTTTCGGATTTGGAAAGGATCGTTTCAAGCAGCTACCCGCGAGCTTCAACGCATTTATGGCAAGGAAGAACTCAACCTTTAG 1389 41.47 MNKGFWMTKGPVHDANSTFDSPSIINPKRPHLWFIDGSEKQMFPNKKQAIQAPNSKMTGGLSNVNIVPWENTADYQSVQNQFIGRLFGSESVRTTDFAHRNTSSVVTDRLNLRRKGIEDQFGEDAAVGLSISHAMEVPEPSLSCGGVEKVKINQVKDNIHGLQASLIDKSDRGTGGQLSLEGYYKEIENGLVSVGSAYIKEDDSFNLTGQTSDHGDNHIRLLRPSGRINDNVISIGDDYNKGDRNVISFGGFPDEQGIIPLASSLGSHDPTFYESSFEVSEAAGVKGLESSNFDLAVNSTHITRLKHDITSKSRTEYKIRKEAPNSFPSNVRSLISTGMLDGVPVKYVSLAREELRGIIKGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKGSFQAATRELQRIYGKEELNL 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53883887 53886435 - evm.model.ptg000010l.393 HCH2g1111 540336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1111 462 Pfam Tify domain binding domain 357 412 IPR032308 -
HCH2g1111 462 PANTHER AUTOIMMUNE REGULATOR 1 446 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0472 HCH-Chr1:53309673 HCH2g1111 HCH-Chr2:53883887 1.50E-86 wgd
HCH2g1111 HCH-Chr2:53883887 HCH9g0644 HCH-Chr9:4280497 9.90E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1111 - - - 0.0