Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1111 ATGAACAAAGGTTTTTGGATGACAAAGGGTCCCGTGCATGATGCAAATTCAACTTTTGACAGCCCTTCGATAATAAACCCAAAGCGGCCACACCTCTGGTTTATAGATGGTTCTGAGAAACAGATGTTCCCCAACAAGAAGCAAGCTATTCAAGCTCCAAATAGCAAAATGACTGGAGGGTTGTCAAATGTAAATATAGTTCCTTGGGAGAATACTGCTGATTACCAGTCTGTTCAAAATCAATTTATTGGCCGCTTATTTGGATCTGAATCAGTGAGGACCACTGACTTTGCTCACAGGAACACATCTTCTGTTGTTACTGATAGGTTGAATCTCAGGAGAAAAGGGATTGAAGACCAATTTGGAGAGGATGCGGCTGTTGGGCTGTCTATATCTCATGCTATGGAGGTTCCTGAACCATCTCTTAGCTGTGGAGGAGTTGAAAAGGTGAAAATTAATCAGGTTAAAGATAACATACATGGTTTGCAAGCATCTTTAATAGATAAATCTGATAGGGGAACTGGTGGTCAACTATCCCTAGAAGGTTACTATAAAGAAATTGAAAATGGCCTTGTATCGGTGGGATCGGCCTATATTAAGGAGGATGACAGCTTCAATTTGACCGGTCAGACCTCTGACCATGGGGATAACCACATTAGGTTACTACGTCCTAGTGGGAGGATAAACGACAATGTTATATCCATAGGTGATGATTACAACAAAGGGGATAGAAATGTAATTTCATTTGGTGGTTTTCCTGATGAACAAGGTATTATCCCATTAGCTAGTTCTCTTGGAAGCCACGATCCAACGTTCTATGAATCTTCATTCGAAGTGTCTGAAGCTGCTGGTGTCAAAGGGTTGGAATCATCAAATTTTGATTTAGCTGTAAACAGTACCCATATAACTAGGCTAAAGCATGATATAACGTCGAAGAGTAGAACGGAATACAAAATAAGGAAAGAGGCTCCGAACAGCTTCCCCTCAAATGTTAGAAGTTTGATATCCACAGGAATGCTTGATGGTGTTCCTGTGAAGTACGTCTCCTTGGCCAGAGAGGAGCTTCGTGGAATTATAAAGGGATCTGGCTATCTCTGTGGGTGCCAATCCTGCAATTTTTCCAAGATGCTTAATGCCTATGAGTTTGAGCGACATGCTGGCTGCAAGACGAAACACCCAAATAATCACATATACTTTGAGAATGGGAAGACGATTTACCAAATAGTACAAGAATTGAGGAGCACTCCAGAGAGCTTGTTGTTTGATACAATTCAAACTATCTTCGGTGCACCTATCAACCAGAAATCTTTTCGGATTTGGAAAGGATCGTTTCAAGCAGCTACCCGCGAGCTTCAACGCATTTATGGCAAGGAAGAACTCAACCTTTAG 1389 41.47 MNKGFWMTKGPVHDANSTFDSPSIINPKRPHLWFIDGSEKQMFPNKKQAIQAPNSKMTGGLSNVNIVPWENTADYQSVQNQFIGRLFGSESVRTTDFAHRNTSSVVTDRLNLRRKGIEDQFGEDAAVGLSISHAMEVPEPSLSCGGVEKVKINQVKDNIHGLQASLIDKSDRGTGGQLSLEGYYKEIENGLVSVGSAYIKEDDSFNLTGQTSDHGDNHIRLLRPSGRINDNVISIGDDYNKGDRNVISFGGFPDEQGIIPLASSLGSHDPTFYESSFEVSEAAGVKGLESSNFDLAVNSTHITRLKHDITSKSRTEYKIRKEAPNSFPSNVRSLISTGMLDGVPVKYVSLAREELRGIIKGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKGSFQAATRELQRIYGKEELNL 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53883887 53886435 - evm.model.ptg000010l.393 HCH2g1111 540336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1111 462 Pfam Tify domain binding domain 357 412 IPR032308 -
HCH2g1111 462 PANTHER AUTOIMMUNE REGULATOR 1 446 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1111 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0472 HCH-Chr1:53309673 HCH2g1111 HCH-Chr2:53883887 1.50E-86 wgd
HCH2g1111 HCH-Chr2:53883887 HCH9g0644 HCH-Chr9:4280497 9.90E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0209 . 21 830 PHD Transcription Factor Family AT3G53680 53.5 8.6e-245 843.6
HCH9g0644 . 381 509 PHD Transcription Factor Family AT3G53680 53.5 2.8e-38 157.5
HCH2g1111 . 319 445 PHD Transcription Factor Family AT3G53680 54.7 1.4e-37 155.2
HCH1g0472 . 433 559 PHD Transcription Factor Family AT3G53680 55.9 1.8e-37 154.8
HCH1g0081 . 13 409 PHD Transcription Factor Family AT5G22260 60.7 6.4e-134 474.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004604 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 4 3 42