Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1121 ATGCCAAGAAAAGGAATGAGAAGCGTTTTCTTTCAATCCAAAAAACCCAATTCCAATTCCAATTCCAGTTCTAGACCCGATGGCTCACCACACCACAGTTTTTCTGAATCCTTAATGGAAGAAAATATTGAAACCACGAAATCGTTCGTTTCCAAATGGGCTAACAACGTTAACGATGTTTCTCTGTTTAACGGAAACCGTAACGACGCTAAACAGTACATTGACGTCGTTAAAAAACTACACACCGCCATGCACAGCCTCGTTTCTCGAAACCCTAATTCGGAGAAGCTCGTTCGCGCTCAAAACGTGATGAGGATCGCCATGGAGATTCTTCAGAAGGAGTTTTACCAGATTTTATCGGTTAACAGAGAGTTTTTATATCCTGAATCTGTTTCTAGCATGCACTCACCGAGGAGTACTTCGGCTAGTACGTCCGATCTTGAGATTGAATCGGAAGATGAGTTTCGCTTTGCTTATGATCATCAATCTATTGCTGAGGTGGAGAAGGCTTCGATTGCTGCAATGGCGGATTTGAAATTGATAGCGGATTGTATGATTTCTACTGGTTATGGAAAAGAATGTGTTAAGGTTTATAAAATTATTAGGAAATCGATCGTGGATGAGAGTCTTTATAATTTAGGGATTGAGAAGATGAGTTCTGCGAAATTACAGAAGTTGGATTGGGAGGTTTTGGAGATGAAGATTAAGAATTGGTTGAAAGCGGTGAAAATTGCTGTCAAAACTCTGTTTGATGGAGAGAGGATTCTCTGCGATCATATTTTCTCGTCTTCTTCGTCGATTAGAGAATCGTGTTTCGCTGAAATATCTAAAGAAGGCGCGATGATTCTGTTTGGATTTCCGGAATTGGTAGCGAGGTATAAGAAAACGCCTGAGAAAATATTCAATGTCTTGAATCTATACGAAGCTATATCCGATCTCTGGCCGGAGATTGAATATATCTTCTCATCGGTGTCAACGGCGATGATTCAATCACAAGCGTTAACTTCACTCATCAAGCTCGGCGAGAATATCCGTACGATGCTGATTGATTTCGAATCAGCGATTCAGAAAGATTCATCGAAAACGCCGGTTCCGAGAGGCGGAATTCATCCTCTCACACGTTATGTAATGAATTACATTTCGTTCCTTTCCGATTACAGTGGAATTCTAAACGACATCGTAACGAATTGGCCTGTTGAGACGCCGTTACCGTTGCCGGAATCGTATTATGGAAGCCCTAACTCTAAGCAAGATGAAAATCCGCTTACCTTACGGTTAGCGTGGTTGATTCTCGTTCTCCTCTGTAAACTCGATGGAAAATCAGAGCATTATAACGATATCGCACTATCGTACTTGTTCTTAGCCAATAATCTCCGATACGTCGTCAATAAAGTCCGTACATCGAATTTGAAATTCGTTATCGGCGGCGATTGGATTGAGAAGCACGAAGAGAAGGTTAAACAGTATACGTCTAATTACAAGCGTATTGGATGGAGTGAGGTTTTCTCGGCGTTTCCGGCCGATGTTACGGCGGAGATCACGGCGGAGGAAGCTATAGAATCTTTCAGAAGGTTTAATAGAGCTTTTGAAGAAACATATAGAAGACAGAGATCTTGGGTCGTACCCGACCCGAAATTTCGAGACGAAATAAAGATATCGTTGGCGAAGGATATTGGAGTTTTGTACGGTGAACTTTACGCCAGATATCGGGAGAGATTGGGGTGGGTTGTCGGGTCGGAGTCGGTTATCAGATTTTCCCCGGATGATTTGGGAAATTATTTGTCGGATCTATTCTTTGGGACCGGGTCGGGTAGTGTAGGGAGCGTGTCGCCATCTGTATCGTCCACTTCCTCGCCGTCTCCTTCTCGTGGGAGGTTAAGTCGTTGA 1887 42.82 MPRKGMRSVFFQSKKPNSNSNSSSRPDGSPHHSFSESLMEENIETTKSFVSKWANNVNDVSLFNGNRNDAKQYIDVVKKLHTAMHSLVSRNPNSEKLVRAQNVMRIAMEILQKEFYQILSVNREFLYPESVSSMHSPRSTSASTSDLEIESEDEFRFAYDHQSIAEVEKASIAAMADLKLIADCMISTGYGKECVKVYKIIRKSIVDESLYNLGIEKMSSAKLQKLDWEVLEMKIKNWLKAVKIAVKTLFDGERILCDHIFSSSSSIRESCFAEISKEGAMILFGFPELVARYKKTPEKIFNVLNLYEAISDLWPEIEYIFSSVSTAMIQSQALTSLIKLGENIRTMLIDFESAIQKDSSKTPVPRGGIHPLTRYVMNYISFLSDYSGILNDIVTNWPVETPLPLPESYYGSPNSKQDENPLTLRLAWLILVLLCKLDGKSEHYNDIALSYLFLANNLRYVVNKVRTSNLKFVIGGDWIEKHEEKVKQYTSNYKRIGWSEVFSAFPADVTAEITAEEAIESFRRFNRAFEETYRRQRSWVVPDPKFRDEIKISLAKDIGVLYGELYARYRERLGWVVGSESVIRFSPDDLGNYLSDLFFGTGSGSVGSVSPSVSSTSSPSPSRGRLSR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53938680 53940566 + evm.model.ptg000010l.383 HCH2g1121 540346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1121 628 FunFam Exocyst subunit Exo70 family protein 56 605 - -
HCH2g1121 628 MobiDBLite consensus disorder prediction 605 628 - -
HCH2g1121 628 Gene3D Exocyst complex component Exo70 54 605 - -
HCH2g1121 628 MobiDBLite consensus disorder prediction 1 35 - -
HCH2g1121 628 PANTHER EXOCYST COMPLEX PROTEIN EXO70 41 600 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
HCH2g1121 628 Pfam Exocyst complex component Exo70 N-terminal 50 120 - -
HCH2g1121 628 SUPERFAMILY Cullin repeat-like 54 598 IPR016159 -
HCH2g1121 628 Pfam Exo70 exocyst complex subunit C-terminal 236 596 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
HCH2g1121 628 MobiDBLite consensus disorder prediction 11 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1121 HCH-Chr2:53938680 HCH6g0062 HCH-Chr6:687870 5.70E-84 dispersed
HCH1g0497 HCH-Chr1:53786940 HCH2g1121 HCH-Chr2:53938680 1.70E-160 wgd
HCH11g0224 HCH-Chr11:2061486 HCH2g1121 HCH-Chr2:53938680 3.00E-165 wgd
HCH2g1121 HCH-Chr2:53938680 HCH3g1304 HCH-Chr3:49769931 3.10E-183 wgd
HCH2g1121 HCH-Chr2:53938680 HCH9g0632 HCH-Chr9:4206381 2.80E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1121 K07195 - csv:101212978 818.92