Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1125 ATGGGATGTAGAAGGAGGTTTGAATTATTCATCTGGGTTGTGTTAATTTTAATTTCGTCGATTCCTTGCTTTTATTGTGAGTTTAAACCTGTAGACAATTATCTTATTGACTGTGGATCGCCTGGAAATACTTCGGTAGGTAATCGGGTTTTTGCTGCCGATAGTTTGGTATCGAAATTGCTTTCGACACCGGAAGTTGTTCTGGCTAATACTAGTTTGAAACCCTCCAGTTCTAATGATTCATCGTTGTTTGAAACAGCTAGAATCTTTACTGGATCATCGAAATTCACATTTCCTATCAAACAGATCGGAAGGCATTGGATCCGTCTCTATTTTTATCCGTTCGTGTATTCTGGATATAATATGAGTGCTGCAAGTTTTAGTGTTTCGAGTAAAGATTATGTTCTGTTGCGGGAATTGGTTGTAGAGAAGGGTCCTGTGGTTAAAGAATTCTCTGTAAATGTGGCATCAGATACCCTTGAAATTGCTTTTGTTCCTTCGAATGGGTCATTTGCGTTTTTGAATGCCATTGAAGTTGCTTCTGTTCCTGATATTCTCATTCTTGATGAAGCCAATTCATTAGAACCGCCCGGTAGATTTCGAGGGTTGTCAACTCTTGCCTATGAGACTGTTGGTAGGATTAATATGGGAGGGCCAAGAGTTGCTCCTGGTGATGATCCCCTCGGGCGTAATTGGGTTTCTGATGAAAGCTTTCTAGTTGATAGGAATTCTGCCACAAGTCTCTCTAATATTGCAGCTGTGAAATACAGTGATGAAGGTGCAGCGCCGGAAATTGCTCCAGCTACTGTCTATGGTACCCTCACTGAGATGAACTCAAAGGATGATCCCAATAGCAAGTTCAATGTGACATGGTTGTTTAATGTGGATCCCGGGTTTCGGTACCTCGTTCGCTTCCACTTCTGTGACATCGTGAGTAAATCTCTTCACGATCTTTATTTCAATGTTTATGTCAACTCCTGGCTGGTTGCTCAGGATCTAGATCTCAGTGTTTATCTTAGCAGTGCCTTGGGCACTCCATTCTATATGGATTCCATTACAGGATTGATCCATAGTGACAAACTTTATGTGAGCATTGGCCCAGCCAATTTAGCTACTGCGTATCCAAATGCCATTCTAAATGGTCTGGAGATCATGAAAATGAACAATTCTGTTGGTAGTCTTAGTGGAGAGGACTCCGTAATTGGTTTATCAGTCTCAAACTCAAAAAAGTATGTTGGCATCATTGTGGGTGTGAGCGTTGGGGCATTTGTTGTAGTCATACTGGTCGGGATCCTGTTTGTGTTGCACAGACGAAAAGGCAAAGTAATGCGTCAAGCTCAATCTAAGACATGGATTTCAATATCCACTGCTGCAGGAAATTCACATACTACTGGAAGTAAATACTCAAATGGCACAATCACAAGTGCTGCTTCTAACTTAGGGTATCGCATACCTTTCGCAGCGGTTCAAGAGGCTACAAGTAACTTTGACGAGAGCTGGGTTATTGGTATTGGCGGGTTCGGTAAAGTATACAAAGGAGTTCTAAACGACAGCACCGAAGTTGCTGTTAAGAGGGGGAACCCACGTTCCCAACAAGGTCTGGTAGAGTTTCAAACTGAAATCGAGATGTTATCACAGTTCCGCCATCGTCATCTTGTTTCATTAATTGGGTACTGTGATGAGAAGAATGAGATGATATTGATTTATGAGTACATGGAAAAAGGGACCCTGAAGAGTCATCTCTATGGTTCTGGTTTCCCTAGTTTGAGTTGGAAGGAAAGACTTGAGGTCTGCATTGGAGCAGCTAGAGGACTTCATTACCTTCATACTGGTTATGCCAAACCCGTTATTCATCGTGATGTGAAGTCCGCAAATATTTTGCTTGATGAAAATCTCATGGCAAAAGTGGCTGATTTTGGGCTCTCTAAGACAGGGCCTGAAATTGACCAAACCCATGTCAGTACAGCTGTGAAAGGGAGTTTTGGGTACCTTGATCCTGAATATTTCAGAAGGCAACAACTAACCGAGAAATCAGATGTTTATTCTTTTGGAGTTGTTCTGTTCGAAGTCCTTTGTGCAAGACCGGTTATAGATCCAACCCTTCCAAGAGAAATGGTGAACTTGGCTGAATGGGCAATGAAGTGGCAGAAGAGAGGACAGTTGGACCAAATCATTGATCCTACTTTAGCTGGAAAAATTAGACCGAGTTCTCTCAGGAAGTTTGGAGAAACTGCTGAAAAATGCTTGGCCGACTTCGGAGTTGACCGGCCATCGATGGGAGATGTCTTGTGGAATCTGGAGTACGCCCTTCAGCTACAAGAAGCAGTTATAGAAGTTGATCCCGAGGATAACAGTACGAATATGATTGGTGAGCTCTCTCCACAAATCAATAATTTCAATGAAGCCGAGGCGGGCATTTCAGCCACACAGTTTGACATACCTGGTGTGGATGATCTTTCTGGAGTCTCCATGAGTAGGGTTTTCTCCCAGTTGGTAAAATCCGAGGGAAGGTGA 2514 42.64 MGCRRRFELFIWVVLILISSIPCFYCEFKPVDNYLIDCGSPGNTSVGNRVFAADSLVSKLLSTPEVVLANTSLKPSSSNDSSLFETARIFTGSSKFTFPIKQIGRHWIRLYFYPFVYSGYNMSAASFSVSSKDYVLLRELVVEKGPVVKEFSVNVASDTLEIAFVPSNGSFAFLNAIEVASVPDILILDEANSLEPPGRFRGLSTLAYETVGRINMGGPRVAPGDDPLGRNWVSDESFLVDRNSATSLSNIAAVKYSDEGAAPEIAPATVYGTLTEMNSKDDPNSKFNVTWLFNVDPGFRYLVRFHFCDIVSKSLHDLYFNVYVNSWLVAQDLDLSVYLSSALGTPFYMDSITGLIHSDKLYVSIGPANLATAYPNAILNGLEIMKMNNSVGSLSGEDSVIGLSVSNSKKYVGIIVGVSVGAFVVVILVGILFVLHRRKGKVMRQAQSKTWISISTAAGNSHTTGSKYSNGTITSAASNLGYRIPFAAVQEATSNFDESWVIGIGGFGKVYKGVLNDSTEVAVKRGNPRSQQGLVEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMEKGTLKSHLYGSGFPSLSWKERLEVCIGAARGLHYLHTGYAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKRGQLDQIIDPTLAGKIRPSSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQEAVIEVDPEDNSTNMIGELSPQINNFNEAEAGISATQFDIPGVDDLSGVSMSRVFSQLVKSEGR 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53975542 53978055 + evm.model.ptg000010l.379 HCH2g1125 540350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1125 837 ProSiteProfiles Protein kinase domain profile. 496 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1125 837 SMART serkin_6 496 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1125 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g1125 837 Pfam Malectin-like domain 36 386 IPR024788 -
HCH2g1125 837 CDD STKc_IRAK 502 767 - -
HCH2g1125 837 PANTHER OS07G0166700 PROTEIN 483 774 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
HCH2g1125 837 Gene3D Phosphorylase Kinase; domain 1 457 571 - -
HCH2g1125 837 FunFam Receptor-like protein kinase FERONIA 207 389 - -
HCH2g1125 837 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524(InterPro)
HCH2g1125 837 SUPERFAMILY Protein kinase-like (PK-like) 475 767 IPR011009 -
HCH2g1125 837 FunFam receptor-like protein kinase FERONIA 460 571 - -
HCH2g1125 837 Gene3D - 33 182 - -
HCH2g1125 837 Gene3D - 206 389 - -
HCH2g1125 837 Gene3D Transferase(Phosphotransferase) domain 1 572 789 - -
HCH2g1125 837 FunFam Receptor-like protein kinase FERONIA 572 787 - -
HCH2g1125 837 FunFam Putative receptor-like protein kinase 33 183 - -
HCH2g1125 837 Pfam Protein tyrosine and serine/threonine kinase 501 692 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1249 HCH-Chr11:44652543 HCH2g1125 HCH-Chr2:53975542 1.10E-204 dispersed
HCH2g1125 HCH-Chr2:53975542 HCH8g1279 HCH-Chr8:47967930 9.20E-215 dispersed
HCH12g1105 HCH-Chr12:8576738 HCH2g1125 HCH-Chr2:53975542 1.80E-239 transposed
HCH14g1131 HCH-Chr14:38199611 HCH2g1125 HCH-Chr2:53975542 1.40E-173 transposed
HCH1g0503 HCH-Chr1:53866776 HCH2g1125 HCH-Chr2:53975542 3.40E-238 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81345 PF12819 Malectin_like 1.10E-32 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1125 - - - 0.0