Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1136 ATGGAAGCATCAGATAAACCAAACACCAAATCTTCTTCATCACCTCTCGCACCTTTCCCAAGAGACTCTCGCGGCTCCCTCGAAGTCTTCAATCCTTCCTCCACGTACTCCTCCTCCCGTTCCACCAATTCCACTCCCCGAACAACAAACCCCACGTGGCCCAATTGGGTCGAGCCACGTACCAGCAACGAATCCGACAGCTCTAAAAAACTTCCCGCCAAACCCAACCCCCCCGCCGGCAGTGGTGAGATTACGTCATGGATGGCTTTCAAAGACGCCGCCGACCCATCACAGCCGTCGTCGCCGCTCTCTCAGAAAACTATCTCCGCCATACTGAACGAGAAATCCACGCCGGCGTCCGAGGGAGACGAAGTGGGGTCTGCTGCGCAACGCGCCGCCGAGTGGGGGTTGGTGTTGAAAACTGACGTGGAGACGGGGAAGCCTCAGGGAGTTGGAGTTAGGACTTCGGGAGGGGAAGAGCCGAATGGGAAATTACAGGAGAATTCAAAAAGGACTTCGAATAATTCGGTGAGAAGTTCGGGCGACATGTCGGATGACGGAGGGAGGGAAAGAGGAATCCCGAGAGTTTCGGAGGATTTGAAAGACGCTCTGTCGACTTTTCAACAGACGTTCGTTGTTTCGGATGCGACGAAACCCGATTACCCGATTATGTATGCCAGTGCCGGGTTTTTCAAGATGACTGGATATACTTCGAAGGAAGTTATAGGGAGAAACTGTCGATTTTTACAGGGTGCAGATACGGACCCAGAAGATGTGGCTAAGATTCGGGAGGCTTTACAAGTCGGGACTAGTTACTGTGGGAGGTTGTTGAATTATAAGAAAGATGGGACCCCTTATTGGAATTTACTTACTATTTCACCTATCAAGGATGATGATGGCAAAGTTCTCAAATTTATTGGAATGCAAGTGGAGGTGAGCAAGCATACTGAGGGGTTCAAAGATAAGATGGTCCGTCCCAATGGATTGCCAGAATCTTTGATTCGTTATGATGCCCGTCAAAAGGAGTTGGCTACCAATTCAGTGACTGAACTAGTGCAGGCTGTTAAAAGACCTCGGTCTCTGAGTGAATCTACTAACCGTCCTTTTATTAGAAAATCGGAAGGTGATCGTGATGAAGAACGAGCGGAGCCAATGGTCAGGCGAAAGTCGGAGAGTGCAGCTTCAAATGGAAAGAATTCTAAAGGGGGAAGTAGGAGGTCAATGCAGAGTATCAGTGAGTTGCCCGAGAAGAAACCGAAAAAATTTAGTCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATATTGAAAGCTTTGACATTGAAGATGCTGATGATGATGATGATGAGACTGATGACGACGAGAGGTCGAACAGTGTCGACAAAGTAAGGCAAAGGGAGAAGAGAAAGGGTATTGATTTAGCTACTACACTTGAACGTATAGAGAAAAATTTTGTCATTACCGATCCTCGATTGCCTGACAATCCCATTATATTTGCTTCTGATAGCTTCCTGGAGCTAACTGAGTATAGTCGAGAAGAAATCTTGGGACGAAATTGCAGGTTCCTTCAAGGACCTGAAACTGATCGAACAACGGTAAGGAAAATAAGAGACGCAATTGACAACCAAACAGAAGTTACAGTGCAGCTAATTAACTACACGAAAAGCGGTAAAAAATTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAAAAGGGAGAAGTCCAGTATTTTATTGGAGTACAACTTGATGGTAGTCAGCATGTGGAACCGCTAAGCAATTGCATACCAGAGTCTACTGCCAAAGAGGGTGAAAAAGTGATTAGAGAAACTGCTGAAAATGTTGATGTGGCAGCTCGAGAACTTCCGGACGCCAATTTGAAACCAGAAGATTTATGGGCAAATCATTCTAAAGTGGTTCAACCAAAACCTCACAGGAAGGATAGTCCTCCTTGGATAGCTGTCCAGAAGATTTTGGAGAGTGGTGAACCAATAGGATTGAAGCATTTCAGGCCAGTCAAACCTTTGGGATCAGGCGATACCGGCAGTGTGCATTTGGTAGAACTGTGTGGGACTGGTCAGTTTTTTGCAATGAAGGCAATGGATAAAGGCATTATGCTCAACCGGAACAAGGTGCATAGAGCTTGTGCAGAGAGAGAAATCCTTGACATGATGGATCATCCGTTCCTTCCTGCATTATATGCTTCATTTCAGACGAAAACACATGTTTGTCTCATAACTGATTATTGCCCCGGTGGAGAACTATTTCTGCTCTTGGACAGACAACCTACAAAGGTCCTGAAGGAAGATGCTGCAAGGTTTTATGCTGCTGAAGTAATTGTTGCATTGGAGTATCTTCATTGTCAAGGGGTAATTTACAGGGATTTGAAACCTGAGAATGTGCTAATCCAGGACAACGGACATGTTGCCTTGACGGATTTCGACTTGTCGTGTTTGACTTCTTGCAAACCTCAGCTTTTGCTTCCAAGCACAAATGAGAAGAAGAAGCACTTAAAAGCTCAACAGACTCCAATCTTTATGGCTGAACCGATGAGAGCTTCAAATTCATTCGTTGGCACCGAAGAGTACATAGCACCGGAAATCATAACTGGGGCAGGCCATACTAGTGCAGTGGACTGGTGGGCTCTAGGTATCCTTCTATATGAGATGCTCTTTGGATACACACCATTTAGAGGAAAGACAAGGCAGAAGACTTTTGCCAATATTCTTCACAAGGATCTTAAGTTTCCAAGAAGTAAATCGGCTAGTCTCAATGCAAAGCAATTAATGTTCAGATTATTGCATAGAGACCCCAAAAACCGACTGGGTTCTCGAGAAGGCGCTAACGAAATCAAAGGGCATCCGTTCTTCCGAGGTGTCAACTGGGCGCTGGTTCGCTGCATGAATCCTCCTGAGCTCGAAGCTCCGGTTATGGAGACGACAGAAGCTGAAAAGGATGCCATTAAAGGGTCAGATCTTGAACTAAGAGATCTTGAACTGAGTGTTTTCTGA 3021 45.71 MEASDKPNTKSSSSPLAPFPRDSRGSLEVFNPSSTYSSSRSTNSTPRTTNPTWPNWVEPRTSNESDSSKKLPAKPNPPAGSGEITSWMAFKDAADPSQPSSPLSQKTISAILNEKSTPASEGDEVGSAAQRAAEWGLVLKTDVETGKPQGVGVRTSGGEEPNGKLQENSKRTSNNSVRSSGDMSDDGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQVGTSYCGRLLNYKKDGTPYWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKELATNSVTELVQAVKRPRSLSESTNRPFIRKSEGDRDEERAEPMVRRKSESAASNGKNSKGGSRRSMQSISELPEKKPKKFSRRSFMGIMRKSQSNIESFDIEDADDDDDETDDDERSNSVDKVRQREKRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRTTVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPESTAKEGEKVIRETAENVDVAARELPDANLKPEDLWANHSKVVQPKPHRKDSPPWIAVQKILESGEPIGLKHFRPVKPLGSGDTGSVHLVELCGTGQFFAMKAMDKGIMLNRNKVHRACAEREILDMMDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAARFYAAEVIVALEYLHCQGVIYRDLKPENVLIQDNGHVALTDFDLSCLTSCKPQLLLPSTNEKKKHLKAQQTPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLFGYTPFRGKTRQKTFANILHKDLKFPRSKSASLNAKQLMFRLLHRDPKNRLGSREGANEIKGHPFFRGVNWALVRCMNPPELEAPVMETTEAEKDAIKGSDLELRDLELSVF 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54029545 54037803 - evm.model.ptg000010l.368 HCH2g1136 540361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1136 1006 MobiDBLite consensus disorder prediction 392 410 - -
HCH2g1136 1006 MobiDBLite consensus disorder prediction 356 470 - -
HCH2g1136 1006 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 309 IPR035965 -
HCH2g1136 1006 Gene3D PAS domain 461 625 - -
HCH2g1136 1006 MobiDBLite consensus disorder prediction 27 70 - -
HCH2g1136 1006 PANTHER FLIPPASE KINASE 1-RELATED 603 982 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH2g1136 1006 FunFam Putative LOV domain-containing protein 757 972 - -
HCH2g1136 1006 ProSiteProfiles PAC domain profile. 270 324 IPR000700 -
HCH2g1136 1006 CDD PAS 487 587 IPR000014 -
HCH2g1136 1006 FunFam LOV domain-containing protein 672 756 - -
HCH2g1136 1006 CDD PAS 223 312 IPR000014 -
HCH2g1136 1006 Gene3D PAS domain 210 366 - -
HCH2g1136 1006 SMART pas_2 198 267 IPR000014 -
HCH2g1136 1006 SMART pas_2 474 543 IPR000014 -
HCH2g1136 1006 ProSiteProfiles Protein kinase domain profile. 673 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1136 1006 ProSiteProfiles PAC domain profile. 546 600 IPR000700 -
HCH2g1136 1006 MobiDBLite consensus disorder prediction 161 182 - -
HCH2g1136 1006 FunFam Putative LOV domain-containing protein 210 366 - -
HCH2g1136 1006 NCBIfam PAS domain S-box protein 223 315 IPR000014 -
HCH2g1136 1006 NCBIfam PAS domain S-box protein 497 587 IPR000014 -
HCH2g1136 1006 Gene3D Phosphorylase Kinase; domain 1 672 756 - -
HCH2g1136 1006 Pfam PAS domain 217 313 IPR000014 -
HCH2g1136 1006 Pfam PAS domain 495 587 IPR000014 -
HCH2g1136 1006 SUPERFAMILY Protein kinase-like (PK-like) 651 981 IPR011009 -
HCH2g1136 1006 Pfam Protein kinase domain 676 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1136 1006 ProSiteProfiles PAS repeat profile. 196 267 IPR000014 -
HCH2g1136 1006 MobiDBLite consensus disorder prediction 1 19 - -
HCH2g1136 1006 ProSitePatterns Protein kinases ATP-binding region signature. 679 702 IPR017441 GO:0005524(InterPro)
HCH2g1136 1006 FunFam LOV domain-containing protein 461 625 - -
HCH2g1136 1006 MobiDBLite consensus disorder prediction 441 457 - -
HCH2g1136 1006 CDD STKc_phototropin_like 671 979 - -
HCH2g1136 1006 SMART serkin_6 673 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1136 1006 ProSiteProfiles PAS repeat profile. 476 545 IPR000014 -
HCH2g1136 1006 Gene3D Transferase(Phosphotransferase) domain 1 757 981 - -
HCH2g1136 1006 MobiDBLite consensus disorder prediction 1 193 - -
HCH2g1136 1006 MobiDBLite consensus disorder prediction 97 116 - -
HCH2g1136 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g1136 1006 SMART pac_2 549 591 IPR001610 -
HCH2g1136 1006 SMART pac_2 273 315 IPR001610 -
HCH2g1136 1006 SUPERFAMILY PYP-like sensor domain (PAS domain) 488 587 IPR035965 -
HCH2g1136 1006 MobiDBLite consensus disorder prediction 369 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0956 HCH-Chr1:57778387 HCH2g1136 HCH-Chr2:54029545 9.80E-50 dispersed
HCH2g1136 HCH-Chr2:54029545 HCH7g0369 HCH-Chr7:2662668 1.20E-237 dispersed
HCH2g1136 HCH-Chr2:54029545 HCH2g0628 HCH-Chr2:50079413 2.30E-305 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81346 PF00069 Pkinase 2.90E-63 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1136 K20715 - csv:101214662 1675.6