Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g1138 | ATGGGTTGCTTTCTCCGCATCGGAAAACCGAGGAGAAGATCAAGCCTTCGGCCCTCTTCAGATGCAGTGAAAGTGAAGGCCATTACAAATGGAAAGCAAATGGTCTGTAGAGATAATGACCAGCCTCCTCCAGACACAAAAGGTTTACATTCGAAGAACAACGAGGTTTCCAAGAAATCAAACAGCAGAGAAGATCAACGTGCACAAACATTTACATTTAGCGAACTCGCAGCAGCAACTAGAAATTTCACGCCAGAAAACTTTCTCGGGGAAGGGGGGTTTGGAAAAGTTTACAAGGGAAAGTTGGACCGAATCAATAAGCTCGTAGCTATAAAGCAACTTGACCGCAATGGGCTGCAAGGGATGAGAGAATTTGTGGTGGAAGTGCTGACTTTAAGTCTAGCAGATCATCCAAACCTTGTAAAGTTATTTGGGTATTGCGCCGAGGGGGATCAGATGCTGTTGGTTTACGAGTACATGCCGTTAGGGTCGTTGGAGCACCATTTGCACGATCTTCCACGTGGTAAAAAAGTACTTGATTGGAGAACCAGAATGAAAATAGCAGCTGGAGCAGCCAGGGGATTGGAGTACTTGCATGACAAAATGAAGCCTTCAGTTATATATCGTGATCTAAAATGCTCCAATATCTTGGTGGGTGAGGGGTATAGGGCCAAGCTGTCCGATTTTGGGCTAGCCAAAGTAGGCCCCAGTGGAGATAACACCCATGTTTCTACGAGAGTCATGGGAACCTATGGATATTGTGCACCAGAATATGCAATGACAGGCCAATTATCTTTCAAATCTGATATCTATAGCTTTGGGGTTGTTCTTTTGGAGCTCATTACAGGCAGGAAAGCATTTGATCCTAAAATGCCCCCAAAGGAGCAAAGTCTGGTGCTTTGGGCACGGCCGTTGTTTCGAGATCGGAAGAGGTTTACGTTAATGGCGGATCCGAAGCTTCAATGTGAATATCCAATTAGAGGATTGTATCAAGCTCTTGCCGTTGCTGCAATGTGTCTCCAGGACCAACCGACCATGCGGCCTGCCGTATCAGAAGTGGTCATTGCTTTAGATTTCCTTGCTTCTTCTCCGAATCGTCCTACAGTGCGAGGGGATTAG | 1119 | 45.93 | MGCFLRIGKPRRRSSLRPSSDAVKVKAITNGKQMVCRDNDQPPPDTKGLHSKNNEVSKKSNSREDQRAQTFTFSELAAATRNFTPENFLGEGGFGKVYKGKLDRINKLVAIKQLDRNGLQGMREFVVEVLTLSLADHPNLVKLFGYCAEGDQMLLVYEYMPLGSLEHHLHDLPRGKKVLDWRTRMKIAAGAARGLEYLHDKMKPSVIYRDLKCSNILVGEGYRAKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPEYAMTGQLSFKSDIYSFGVVLLELITGRKAFDPKMPPKEQSLVLWARPLFRDRKRFTLMADPKLQCEYPIRGLYQALAVAAMCLQDQPTMRPAVSEVVIALDFLASSPNRPTVRGD | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 54046726 | 54049402 | - | evm.model.ptg000010l.366 | HCH2g1138 | 540363 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g1138 | 372 | ProSiteProfiles | Protein kinase domain profile. | 83 | 360 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1138 | 372 | PANTHER | OS07G0668900 PROTEIN | 47 | 364 | - | - | |
HCH2g1138 | 372 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 365 | IPR011009 | - | |
HCH2g1138 | 372 | MobiDBLite | consensus disorder prediction | 51 | 65 | - | - | |
HCH2g1138 | 372 | FunFam | Serine/threonine-protein kinase PBS1 | 160 | 371 | - | - | |
HCH2g1138 | 372 | MobiDBLite | consensus disorder prediction | 7 | 67 | - | - | |
HCH2g1138 | 372 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 206 | 218 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH2g1138 | 372 | ProSitePatterns | Protein kinases ATP-binding region signature. | 89 | 112 | IPR017441 | GO:0005524(InterPro) | |
HCH2g1138 | 372 | Pfam | Protein kinase domain | 86 | 353 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1138 | 372 | CDD | STKc_IRAK | 89 | 354 | - | - | |
HCH2g1138 | 372 | SMART | serkin_6 | 83 | 360 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1138 | 372 | Gene3D | Phosphorylase Kinase; domain 1 | 45 | 159 | - | - | |
HCH2g1138 | 372 | FunFam | probable serine/threonine-protein kinase RLCKVII | 54 | 159 | - | - | |
HCH2g1138 | 372 | Gene3D | Transferase(Phosphotransferase) domain 1 | 160 | 367 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g1138 | HCH-Chr2:54046726 | HCH7g1120 | HCH-Chr7:43960087 | 6.50E-128 | dispersed | |
HCH1g0516 | HCH-Chr1:54013798 | HCH2g1138 | HCH-Chr2:54046726 | 1.40E-130 | wgd | |
HCH11g0239 | HCH-Chr11:2172097 | HCH2g1138 | HCH-Chr2:54046726 | 4.30E-130 | wgd | |
HCH2g1138 | HCH-Chr2:54046726 | HCH3g1290 | HCH-Chr3:49108702 | 3.50E-142 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81347 | PF00069 | Pkinase | 6.70E-46 | CL0016 | HCH | PK |
Pathway information
