Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1138 ATGGGTTGCTTTCTCCGCATCGGAAAACCGAGGAGAAGATCAAGCCTTCGGCCCTCTTCAGATGCAGTGAAAGTGAAGGCCATTACAAATGGAAAGCAAATGGTCTGTAGAGATAATGACCAGCCTCCTCCAGACACAAAAGGTTTACATTCGAAGAACAACGAGGTTTCCAAGAAATCAAACAGCAGAGAAGATCAACGTGCACAAACATTTACATTTAGCGAACTCGCAGCAGCAACTAGAAATTTCACGCCAGAAAACTTTCTCGGGGAAGGGGGGTTTGGAAAAGTTTACAAGGGAAAGTTGGACCGAATCAATAAGCTCGTAGCTATAAAGCAACTTGACCGCAATGGGCTGCAAGGGATGAGAGAATTTGTGGTGGAAGTGCTGACTTTAAGTCTAGCAGATCATCCAAACCTTGTAAAGTTATTTGGGTATTGCGCCGAGGGGGATCAGATGCTGTTGGTTTACGAGTACATGCCGTTAGGGTCGTTGGAGCACCATTTGCACGATCTTCCACGTGGTAAAAAAGTACTTGATTGGAGAACCAGAATGAAAATAGCAGCTGGAGCAGCCAGGGGATTGGAGTACTTGCATGACAAAATGAAGCCTTCAGTTATATATCGTGATCTAAAATGCTCCAATATCTTGGTGGGTGAGGGGTATAGGGCCAAGCTGTCCGATTTTGGGCTAGCCAAAGTAGGCCCCAGTGGAGATAACACCCATGTTTCTACGAGAGTCATGGGAACCTATGGATATTGTGCACCAGAATATGCAATGACAGGCCAATTATCTTTCAAATCTGATATCTATAGCTTTGGGGTTGTTCTTTTGGAGCTCATTACAGGCAGGAAAGCATTTGATCCTAAAATGCCCCCAAAGGAGCAAAGTCTGGTGCTTTGGGCACGGCCGTTGTTTCGAGATCGGAAGAGGTTTACGTTAATGGCGGATCCGAAGCTTCAATGTGAATATCCAATTAGAGGATTGTATCAAGCTCTTGCCGTTGCTGCAATGTGTCTCCAGGACCAACCGACCATGCGGCCTGCCGTATCAGAAGTGGTCATTGCTTTAGATTTCCTTGCTTCTTCTCCGAATCGTCCTACAGTGCGAGGGGATTAG 1119 45.93 MGCFLRIGKPRRRSSLRPSSDAVKVKAITNGKQMVCRDNDQPPPDTKGLHSKNNEVSKKSNSREDQRAQTFTFSELAAATRNFTPENFLGEGGFGKVYKGKLDRINKLVAIKQLDRNGLQGMREFVVEVLTLSLADHPNLVKLFGYCAEGDQMLLVYEYMPLGSLEHHLHDLPRGKKVLDWRTRMKIAAGAARGLEYLHDKMKPSVIYRDLKCSNILVGEGYRAKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPEYAMTGQLSFKSDIYSFGVVLLELITGRKAFDPKMPPKEQSLVLWARPLFRDRKRFTLMADPKLQCEYPIRGLYQALAVAAMCLQDQPTMRPAVSEVVIALDFLASSPNRPTVRGD 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54046726 54049402 - evm.model.ptg000010l.366 HCH2g1138 540363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1138 372 ProSiteProfiles Protein kinase domain profile. 83 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1138 372 PANTHER OS07G0668900 PROTEIN 47 364 - -
HCH2g1138 372 SUPERFAMILY Protein kinase-like (PK-like) 69 365 IPR011009 -
HCH2g1138 372 MobiDBLite consensus disorder prediction 51 65 - -
HCH2g1138 372 FunFam Serine/threonine-protein kinase PBS1 160 371 - -
HCH2g1138 372 MobiDBLite consensus disorder prediction 7 67 - -
HCH2g1138 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g1138 372 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524(InterPro)
HCH2g1138 372 Pfam Protein kinase domain 86 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1138 372 CDD STKc_IRAK 89 354 - -
HCH2g1138 372 SMART serkin_6 83 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1138 372 Gene3D Phosphorylase Kinase; domain 1 45 159 - -
HCH2g1138 372 FunFam probable serine/threonine-protein kinase RLCKVII 54 159 - -
HCH2g1138 372 Gene3D Transferase(Phosphotransferase) domain 1 160 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1138 HCH-Chr2:54046726 HCH7g1120 HCH-Chr7:43960087 6.50E-128 dispersed
HCH1g0516 HCH-Chr1:54013798 HCH2g1138 HCH-Chr2:54046726 1.40E-130 wgd
HCH11g0239 HCH-Chr11:2172097 HCH2g1138 HCH-Chr2:54046726 4.30E-130 wgd
HCH2g1138 HCH-Chr2:54046726 HCH3g1290 HCH-Chr3:49108702 3.50E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81347 PF00069 Pkinase 6.70E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1138 - - - 0.0