Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1142 ATGTTTGATCTTAATCTGAATGTTGAATCACAATCAATGGATTCAGTTATGTTTTTCGAGAAGCTTCCACAAGGCTCCGGGAACCAAATGGACGAATCTGGAACTTCAAATTCTTCGATCGTCAATGCTGATACATCAAGCAACGATGACACGTGCTCCACACGCGCCGGTGGTGAAATTTTCACGTTCAACTTCGAGATATTGAAAGCTGGAAGCTCGAACGATGTTGTCACGAAAGAGCTGTTTCCGATAGTGAATCATAACTCGGCGAAGAATTGGATCGAGCTTGGATTCGACTCGGCCGGGGAAGTAAAGATGACTCAGCCACAGCAAGTGAAGAAGAGCAGAAGAGGACCGAGGTCTCGGAGCTCTCAGTATAGAGGAGTCACGTTTTATAGAAGGACTGGACGATGGGAATCTCATATCTGGGATTGCGGGAAACAGGTTTATCTAGGCGGATTCGATACCGCGCATTCTGCGGCGAGAGCATATGATCGAGCTGCTATTAAGTTTAGGGGAGTTGATGCTGATATTAATTTCAATCTTGTTGATTATGAGGAAGATCTGAAACAGATGAAGAATTTGAGCAAGGAAGAATTTGTTCATATACTTCGTCGCCAGAGCACCGGTTTCTCAAGGGGAAGCTCGAAATATCGAGGTGTGACGCTTCATAAATGTGGCCGATGGGAAGCTAGGATGGGGCAGCTTCTTGGGAAAAAGGCATATGACAAGGCGGCAATCAAATGTAACGGGAGGGAAGCTGTAACCAACTTTGAGCCTAGCACGTATGAAGGGGATAGGTTTTCTGAGGGTAGCAATGAAGGTGGCCAAAACATGCTTGATCTCAATTTAGGGATTTCACCCCCCTCAGTCGACAATGGTTCGAAGGATAACGAGGGGCGTCTGCGGTTCTATTCTGGCCCTTATTATGCTGATAACAGGAGTACAATGATGGCGAGCAATGCTGATGCAACAGTTGGAAATCTACCTTCAAAAGGACTGGTAATGACATCAGAGCATGCTCCTTTATGGAATGGTTCACATCCTAGCTTCTTTCCCAGTGAGGAAAGAGTTTCAGAGAAGAGACTTGCATTAGGTTCATCACAAGTAGTCCCCAACTGGGCATGGCAAATTCATGGCCAGGTTAATGCTACCCAAGTGCCACTATTCTCTGCTGCAGCATCATCAGGATTCTCATATCAAGCTACCCAATACCCGGCCGCCATCTGTCCGCCTCATCAATCGGTACTCTGTTTCACTTCTGCTAAAGATTCCCTCAATTCCTCCCAATATCGCCACCAGATGAACCCACAACAGGCACCACCATAA 1329 46.28 MFDLNLNVESQSMDSVMFFEKLPQGSGNQMDESGTSNSSIVNADTSSNDDTCSTRAGGEIFTFNFEILKAGSSNDVVTKELFPIVNHNSAKNWIELGFDSAGEVKMTQPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLVDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAVTNFEPSTYEGDRFSEGSNEGGQNMLDLNLGISPPSVDNGSKDNEGRLRFYSGPYYADNRSTMMASNADATVGNLPSKGLVMTSEHAPLWNGSHPSFFPSEERVSEKRLALGSSQVVPNWAWQIHGQVNATQVPLFSAAASSGFSYQATQYPAAICPPHQSVLCFTSAKDSLNSSQYRHQMNPQQAPP 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54083671 54086701 - evm.model.ptg000010l.362 HCH2g1142 540367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1142 442 SMART rav1_2 125 187 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1142 442 SMART rav1_2 217 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1142 442 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1142 442 Gene3D AP2/ERF domain 216 260 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1142 442 SUPERFAMILY DNA-binding domain 216 260 IPR016177 GO:0003677(InterPro)
HCH2g1142 442 CDD AP2 125 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1142 442 MobiDBLite consensus disorder prediction 23 50 - -
HCH2g1142 442 FunFam AP2-like ethylene-responsive transcription factor 124 183 - -
HCH2g1142 442 MobiDBLite consensus disorder prediction 26 50 - -
HCH2g1142 442 CDD AP2 216 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1142 442 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 37 292 - -
HCH2g1142 442 ProSiteProfiles AP2/ERF domain profile. 125 181 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1142 442 Pfam AP2 domain 125 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1142 442 SUPERFAMILY DNA-binding domain 124 181 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1142 HCH-Chr2:54083671 HCH6g0075 HCH-Chr6:918144 8.70E-39 dispersed
HCH1g0521 HCH-Chr1:54130940 HCH2g1142 HCH-Chr2:54083671 1.20E-81 wgd
HCH11g0244 HCH-Chr11:2206554 HCH2g1142 HCH-Chr2:54083671 8.40E-100 wgd
HCH2g1142 HCH-Chr2:54083671 HCH9g0608 HCH-Chr9:4070787 4.70E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33232 PF00847 AP2 3.80E-10 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1142 K09284 - csv:101222024 674.47