Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1144 ATGGACGCCTTTTTAGATAACATTCCGTCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTTCAACTTATCATTCCCGTTGAGTCCGCTCATCGAGCCGTATCTTACATCGGCGAACTTGGCATCCTTCAATTCAGAGATCTAAACGGGGATAAAAGTCCTTTCCAAAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTTGAGAAAGTTGAGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGACTTCTACACGACCAATTCTACAAGCAGATATTGAGCTAGAGGATTTAGAGATTCGACTAGCTGAACATGAGCATGAGCTGATTGAAATGAATTCTAACAGCGAAAAACTTCGACAGTCATATAATGAGCTCTTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGATGTCCGCTAATAGTCATTCAGTTTCAGAGGACAGGGAGTTAAATGAAAATGTTTACTTGAATGATAACTACGTTGAGACGGCATCATTTCTTGAACAGGATATGAGACCAGGACCATCCAGCCAATCTGGTTTGAGATTTATTAGTGGAATTATTTGTAAATCCAAAGTTCTTAGATTTGAGAGAATGTTGTTTCGTGCGACAAGGGGAAATATGCTTTTCAATCAGGCAACAGCAGACGTAGCGATCATGGATCCCATATCTACAGAAATGGTTGAGAAAACAGTATTTGTAGTGTTTTTCTCTGGGGAGCAGGCCAGAACTAAGGTTATGAAAATCTGTGAGGCTTTTGGAGCAAGTTGTTATCCTGTTCCTGAAGATATAACTAAACAGAGGCAAATAACTAGAGAAGTTTCATCTCGCCTAACTGAACTTGAAGCCACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCTATAGGGTTTCACCTGATAAAATGGATGAATATGGTAAGAAGGGAAAAGGCGGTATACGATACATTGAACATGTTAAATTTTGACGTCACTAAGAAATGTCTTGTTGGAGAAGGCTGGTGCCCAATCTTTGCAAAAACGCAGATTCAGGAGGCATTGCAACGAGCAACATTTGATAGCAGTTCACAAGTGGGTATAATATTTCATGTGATGGATACCTTGGAATCGCCTCCTACGTATTTTAGAACAAACCATTTGACAAGTGCATTTCAGGAAATTGTTGATGCCTATGGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCATTTCTATTTGCTGTGATGTTTGGGGATTGGGGTCATGGAATATGCTTATTGCTTGGATCTTTATTTCTTGTAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTGGGAAGCTTTATGGAGATGTTATTTGGTGGACGCTATGTACTTCTTTTGATGTCATTATTTTCAATTTATTGTGGGTTGATCTACAATGAATTTTTCTCTGTGCCATTTCATATATTCGGTGGGTCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCACACAGTGTGGGGTTAGTTAAATTCCGTGATCCTTATCCATTTGGTGTCGACCCGAGTTGGCGTGGAAGTCGTACAGAACTTCCTTTCCTGAACTCTTTAAAAATGAAGATGTCTATCTTGTTGGGCATTGCCCAGATGAACTTAGGAATCATATTAAGTTATTTCAATGCACGTTTTACCAGAAGCTCACTTGATATCAGGTATCAGTTTGTACCACAAGTGATCTTTCTTAACAGCCTTTTTGGGTATCTCTCTCTTCTCATCGTCATCAAGTGGTGCACTGGATCCAAGGCAGACCTCTACCATGTGATGATATACATGTTTTTGAGTCCAACAGACGATCTTGGTGAGAACGAATTGTTCTGGGGCCAGAGACCCCTACAAATTGTTTTGTTGGTATTGGCTATAATTGCAGTACCGTGGATGCTCTTTCCTAAACCTTTCATTTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACTTATGGGATGCTTGGCACTTCTGAGATGGATCTTGAGGTAGAACCTGATTCGGCAAGACAACACCAAGAGGACTTTAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCCAATACAGCATCATATCTTCGACTTTGGGCTTTAAGCTTGGCACACTCAGAATTGTCGACTGTTTTCTATGAGAAAGTCCTCCTCCTAGCTTGGGGGTACGACAGCTTCGTCATCCGGCTGATTGGTTTAGCTGTTTTTTCCTTTGCTACTGCTTTCATACTACTTATGATGGAGTCTCTTAGTGCCTTCCTTCATGCATTGCGTCTTCACTGGGTAGAATTTCAAAATAAGTTTTACCATGGTGATGGCTACAAGTTCAGGCCCTTTTCCTTTGCCTCTTTTGATGAGGATGAAGATTGA 2460 40.28 MDAFLDNIPSMDLMRSEKMTFVQLIIPVESAHRAVSYIGELGILQFRDLNGDKSPFQRTFVNQVKRCAEMLRKLRFFKDQISKAGVLTSTRPILQADIELEDLEIRLAEHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLMSANSHSVSEDRELNENVYLNDNYVETASFLEQDMRPGPSSQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQATADVAIMDPISTEMVEKTVFVVFFSGEQARTKVMKICEAFGASCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTLESPPTYFRTNHLTSAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGSLFLVARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGGSAYKCRDNSCSDAHSVGLVKFRDPYPFGVDPSWRGSRTELPFLNSLKMKMSILLGIAQMNLGIILSYFNARFTRSSLDIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSKADLYHVMIYMFLSPTDDLGENELFWGQRPLQIVLLVLAIIAVPWMLFPKPFILKKIHTERFQGRTYGMLGTSEMDLEVEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASFDEDED 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54103023 54111878 - evm.model.ptg000010l.360 HCH2g1144 540369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1144 819 Coils Coil 93 127 - -
HCH2g1144 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH2g1144 819 PANTHER VACUOLAR PROTON ATPASES 11 817 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
HCH2g1144 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1144 HCH-Chr2:54103023 HCH4g0766 HCH-Chr4:4922579 2.40E-300 dispersed
HCH2g1144 HCH-Chr2:54103023 HCH7g0534 HCH-Chr7:4096968 3.90E-303 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1144 K02154 - csv:101216514 1532.69