Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1152 ATGAGTACGGAAGGCAGTGATACGAACGCCGCCGTCTCCTCTCGTTCTCATTCTCAATCCCCTTCTTCTTCTTCATCTCCACCGCCGCCGCCGCCAATTATTCTTAGTCCTTGTGCGGCGTGTAAGATTTTGAGGCGGAGATGTGCTGATAGATGTGTATTGGCGCCCTATTTCCCGCCCACTGAGCCGGCGAAATTCGCTATCGCTCATCGAGTTTTTGGCGCTAGCAATATCATCAAGTTCTTGCAGGAACTGCCGGAGACTCAGAGGGCAGATGCAGTAAGTAGTTTAGTTTATGAAGCAAGTGCAAGAATCAGAGATCCTGTATATGGATCTGCAGGGGCCATTTGCCTTCTTCAAAAGCAAGTCAGTGAGCTTCAAGCACAGCTAGCCAAGGCCCAAGCCGAGCTCGTCAATATGCATTGCCAACATTCCAATCTGGTGGCCTTTATTTGCAGGGAGTTTTCTCAATCTCATCTCTCAGTTGAAGAATTCAATCCCAGCCCTGAAAATAGCTACCAAAATATGAGTATTAATCCAACCTTCTTTGAAGATAGCAATATAAACCCTTTGTGGGAACCTCTATGGACTTGA 594 47.14 MSTEGSDTNAAVSSRSHSQSPSSSSSPPPPPPIILSPCAACKILRRRCADRCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPETQRADAVSSLVYEASARIRDPVYGSAGAICLLQKQVSELQAQLAKAQAELVNMHCQHSNLVAFICREFSQSHLSVEEFNPSPENSYQNMSINPTFFEDSNINPLWEPLWT 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54160016 54161943 + evm.model.ptg000010l.352 HCH2g1152 540377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1152 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 163 - -
HCH2g1152 197 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
HCH2g1152 197 Coils Coil 123 143 - -
HCH2g1152 197 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
HCH2g1152 197 MobiDBLite consensus disorder prediction 1 31 - -
HCH2g1152 197 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1152 HCH-Chr2:54160016 HCH3g1271 HCH-Chr3:48172352 4.90E-58 dispersed
HCH1g0528 HCH-Chr1:54215123 HCH2g1152 HCH-Chr2:54160016 1.80E-48 wgd
HCH2g1152 HCH-Chr2:54160016 HCH3g1270 HCH-Chr3:48096045 1.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33234 PF03195 LOB 2.40E-40 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1152 - - - 0.0