Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1152 ATGAGTACGGAAGGCAGTGATACGAACGCCGCCGTCTCCTCTCGTTCTCATTCTCAATCCCCTTCTTCTTCTTCATCTCCACCGCCGCCGCCGCCAATTATTCTTAGTCCTTGTGCGGCGTGTAAGATTTTGAGGCGGAGATGTGCTGATAGATGTGTATTGGCGCCCTATTTCCCGCCCACTGAGCCGGCGAAATTCGCTATCGCTCATCGAGTTTTTGGCGCTAGCAATATCATCAAGTTCTTGCAGGAACTGCCGGAGACTCAGAGGGCAGATGCAGTAAGTAGTTTAGTTTATGAAGCAAGTGCAAGAATCAGAGATCCTGTATATGGATCTGCAGGGGCCATTTGCCTTCTTCAAAAGCAAGTCAGTGAGCTTCAAGCACAGCTAGCCAAGGCCCAAGCCGAGCTCGTCAATATGCATTGCCAACATTCCAATCTGGTGGCCTTTATTTGCAGGGAGTTTTCTCAATCTCATCTCTCAGTTGAAGAATTCAATCCCAGCCCTGAAAATAGCTACCAAAATATGAGTATTAATCCAACCTTCTTTGAAGATAGCAATATAAACCCTTTGTGGGAACCTCTATGGACTTGA 594 47.14 MSTEGSDTNAAVSSRSHSQSPSSSSSPPPPPPIILSPCAACKILRRRCADRCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPETQRADAVSSLVYEASARIRDPVYGSAGAICLLQKQVSELQAQLAKAQAELVNMHCQHSNLVAFICREFSQSHLSVEEFNPSPENSYQNMSINPTFFEDSNINPLWEPLWT 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54160016 54161943 + evm.model.ptg000010l.352 HCH2g1152 540377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1152 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 163 - -
HCH2g1152 197 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
HCH2g1152 197 Coils Coil 123 143 - -
HCH2g1152 197 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
HCH2g1152 197 MobiDBLite consensus disorder prediction 1 31 - -
HCH2g1152 197 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1152 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1152 HCH-Chr2:54160016 HCH3g1271 HCH-Chr3:48172352 4.90E-58 dispersed
HCH1g0528 HCH-Chr1:54215123 HCH2g1152 HCH-Chr2:54160016 1.80E-48 wgd
HCH2g1152 HCH-Chr2:54160016 HCH3g1270 HCH-Chr3:48096045 1.80E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0180 . 1 214 AS2 family AT1G65620 65.9 1.1e-70 263.1
HCH2g0088 . 2 110 AS2 family AT1G65620 81.7 2.3e-47 185.7
HCH8g1410 . 3 113 AS2 family AT1G65620 73.9 1.1e-44 176.8
HCH9g0123 . 1 172 AS2 family AT1G65620 52.6 2.4e-44 175.6
HCH13g0848 . 1 117 AS2 family AT1G65620 66.7 1.9e-41 166.0
HCH3g0362 . 1 118 AS2 family AT1G65620 70.3 3.2e-41 165.2
HCH14g1105 . 12 117 AS2 family AT1G65620 65.1 2.8e-37 152.1
HCH2g0088 . 1 130 AS2 family AT5G66870 83.1 9.2e-59 224.2
HCH10g0180 . 4 129 AS2 family AT5G66870 69.8 4.1e-43 172.2
HCH14g1105 . 12 129 AS2 family AT5G66870 64.4 1.9e-40 163.3
HCH9g0123 . 7 113 AS2 family AT5G66870 68.2 1.6e-39 160.2
HCH8g1410 . 1 113 AS2 family AT5G66870 68.1 2.1e-39 159.8
HCH3g0362 . 1 125 AS2 family AT5G66870 61.6 1.8e-38 156.8
HCH13g0848 . 1 115 AS2 family AT5G66870 61.7 2.0e-37 153.3
HCH2g0088 . 4 118 AS2 family AT2G23660 69.6 2.2e-44 176.4
HCH10g0180 . 6 130 AS2 family AT2G23660 64.8 3.9e-41 165.6
HCH8g1410 . 8 113 AS2 family AT2G23660 64.2 1.8e-38 156.8
HCH9g0123 . 7 121 AS2 family AT2G23660 59.8 5.2e-38 155.2
HCH14g1105 . 12 125 AS2 family AT2G23660 61.4 7.5e-37 151.4
HCH3g0362 . 9 132 AS2 family AT2G23660 58.9 1.7e-36 150.2
HCH13g0848 . 4 114 AS2 family AT3G27650 86.5 4.5e-54 207.6
HCH9g0123 . 4 114 AS2 family AT3G27650 84.7 1.9e-52 202.2
HCH8g1410 . 4 114 AS2 family AT3G27650 78.4 1.8e-47 185.7
HCH3g0362 . 9 114 AS2 family AT3G27650 77.4 4.3e-44 174.5
HCH10g0180 . 3 112 AS2 family AT3G27650 67.3 9.8e-41 163.3
HCH2g0088 . 4 112 AS2 family AT3G27650 67.9 1.3e-40 162.9
HCH8g1410 . 3 113 AS2 family AT5G63090 93.7 3.9e-57 218.0
HCH3g0362 . 3 116 AS2 family AT5G63090 85.1 2.9e-52 201.8
HCH9g0123 . 1 116 AS2 family AT5G63090 82.9 1.9e-51 199.1
HCH13g0848 . 1 113 AS2 family AT5G63090 83.3 3.0e-49 191.8
HCH10g0180 . 1 112 AS2 family AT5G63090 73.7 5.9e-45 177.6
HCH2g0088 . 2 110 AS2 family AT5G63090 70.6 8.8e-41 163.7
HCH3g0911 . 12 148 AS2 family AT5G63090 57.7 4.8e-39 157.9
HCH2g0930 . 12 115 AS2 family AT5G63090 68.3 1.8e-38 156.0
HCH1g0339 . 4 106 AS2 family AT5G63090 69.9 6.9e-38 154.1
HCH1g0339 . 3 117 AS2 family AT2G30130 90.4 1.0e-55 213.4
HCH3g1473 . 3 135 AS2 family AT2G30130 72.6 8.8e-52 200.3
HCH2g0930 . 12 123 AS2 family AT2G30130 75.0 1.6e-45 179.5
HCH3g0911 . 11 113 AS2 family AT2G30130 80.6 3.0e-44 175.3
HCH2g0998 . 7 113 AS2 family AT2G30130 78.5 1.5e-43 172.9
HCH8g1410 . 8 127 AS2 family AT2G30130 62.5 5.5e-38 154.5
HCH3g1271 . 18 162 AS2 family AT2G30130 52.4 7.2e-38 154.1
HCH2g1152 . 36 144 AS2 family AT2G30130 67.9 2.7e-37 152.1
HCH10g0180 . 7 109 AS2 family AT2G30130 68.0 3.6e-37 151.8
HCH13g0584 . 48 150 AS2 family AT2G30130 68.9 8.0e-37 150.6
HCH9g0123 . 8 111 AS2 family AT2G30130 65.4 8.0e-37 150.6
HCH13g0420 . 54 161 AS2 family AT2G30130 64.8 1.0e-36 150.2
HCH3g0911 . 1 165 AS2 family AT1G31320 77.6 3.5e-68 254.6
HCH2g0930 . 1 172 AS2 family AT1G31320 73.6 1.2e-65 246.1
HCH1g0339 . 2 118 AS2 family AT1G31320 71.8 3.2e-45 178.3
HCH3g1473 . 5 170 AS2 family AT1G31320 51.2 1.6e-41 166.0
HCH2g0998 . 8 113 AS2 family AT1G31320 65.1 6.4e-38 154.1
HCH2g1152 . 36 145 AS2 family AT1G31320 68.2 3.2e-37 151.8
HCH3g1271 . 18 149 AS2 family AT1G31320 59.7 5.4e-37 151.0
HCH8g1410 . 9 120 AS2 family AT1G31320 62.5 7.1e-37 150.6
HCH2g1152 . 33 197 AS2 family AT2G28500 58.8 3.4e-50 195.3
HCH3g1271 . 16 187 AS2 family AT2G28500 57.5 1.1e-48 190.3
HCH13g0420 . 50 182 AS2 family AT2G28500 65.4 7.3e-45 177.6
HCH3g1270 . 17 135 AS2 family AT2G28500 73.1 1.6e-44 176.4
HCH1g0528 . 51 170 AS2 family AT2G28500 74.2 3.1e-43 172.2
HCH1g0339 . 5 119 AS2 family AT2G28500 64.3 5.1e-38 154.8
HCH2g0930 . 11 120 AS2 family AT2G28500 66.4 9.6e-37 150.6
HCH3g1270 . 11 135 AS2 family AT1G07900 78.4 7.8e-45 177.2
HCH2g1152 . 33 197 AS2 family AT1G07900 60.4 1.3e-44 176.4
HCH3g1271 . 16 133 AS2 family AT1G07900 72.9 1.3e-44 176.4
HCH1g0528 . 28 170 AS2 family AT1G07900 74.8 1.7e-44 176.0
HCH13g0420 . 24 169 AS2 family AT1G07900 60.3 1.6e-42 169.5
HCH2g0930 . 1 172 AS2 family AT1G16530 58.8 4.1e-50 194.5
HCH3g0911 . 1 165 AS2 family AT1G16530 54.5 3.4e-44 174.9
HCH1g0339 . 5 110 AS2 family AT1G16530 68.2 1.4e-37 152.9
HCH13g0584 . 12 157 AS2 family AT2G30340 73.3 2.5e-57 219.2
HCH1g0301 . 5 136 AS2 family AT2G30340 72.8 4.6e-51 198.4
HCH2g0930 . 9 120 AS2 family AT2G30340 61.6 1.3e-37 153.7
HCH13g0584 . 32 163 AS2 family AT2G40470 80.9 1.9e-57 219.2
HCH1g0301 . 23 136 AS2 family AT2G40470 90.4 3.0e-55 211.8
HCH2g0930 . 9 129 AS2 family AT2G40470 62.0 1.2e-40 163.3
HCH3g0911 . 12 139 AS2 family AT2G40470 59.4 2.1e-40 162.5
HCH13g0561 . 1 174 AS2 family AT3G11090 63.2 6.8e-53 203.8
HCH5g0078 . 1 113 AS2 family AT2G42440 79.6 4.4e-48 188.3
HCH5g1307 . 1 113 AS2 family AT2G42440 72.6 1.7e-44 176.4
HCH5g0079 . 13 130 AS2 family AT2G42440 65.8 3.3e-40 162.2
HCH5g1304 . 8 106 AS2 family AT2G42440 74.7 1.1e-38 157.1
HCH13g1200 . 36 134 AS2 family AT2G42440 70.7 1.6e-37 153.3
HCH5g0078 . 5 113 AS2 family AT3G58190 84.4 7.1e-50 194.1
HCH5g1307 . 3 121 AS2 family AT3G58190 73.9 5.6e-47 184.5
HCH5g0079 . 10 124 AS2 family AT3G58190 69.6 2.4e-42 169.1
HCH5g1304 . 5 114 AS2 family AT3G58190 72.7 2.7e-41 165.6
HCH13g1200 . 36 134 AS2 family AT3G58190 73.7 8.7e-40 160.6
HCH9g1382 . 24 161 AS2 family AT3G58190 55.1 1.6e-38 156.4
HCH5g0078 . 1 141 AS2 family AT2G31310 58.0 2.8e-42 168.7
HCH5g0079 . 6 213 AS2 family AT2G42430 52.4 2.0e-53 206.1
HCH5g1304 . 3 204 AS2 family AT2G42430 51.6 5.2e-49 191.4
HCH5g0078 . 3 107 AS2 family AT2G42430 75.2 5.2e-41 164.9
HCH13g1200 . 36 138 AS2 family AT2G42430 73.8 2.0e-40 162.9
HCH9g1382 . 32 148 AS2 family AT2G42430 65.0 6.3e-39 157.9
HCH5g1307 . 4 107 AS2 family AT2G42430 70.2 5.9e-37 151.4
HCH13g1200 . 36 234 AS2 family AT4G00220 60.7 3.7e-57 218.4
HCH13g1199 . 10 190 AS2 family AT4G00220 54.4 7.4e-42 167.5
HCH13g1200 . 36 252 AS2 family AT2G45420 70.0 6.1e-72 267.7
HCH5g0079 . 18 119 AS2 family AT2G45420 77.5 2.2e-42 169.5
HCH5g1304 . 12 116 AS2 family AT2G45420 76.2 2.5e-41 166.0
HCH9g1382 . 33 139 AS2 family AT2G45420 73.8 2.5e-41 166.0
HCH13g1199 . 10 122 AS2 family AT2G45420 71.7 7.2e-41 164.5
HCH5g1307 . 7 105 AS2 family AT2G45420 73.7 1.0e-39 160.6
HCH5g0078 . 7 105 AS2 family AT2G45420 73.7 4.0e-39 158.7
HCH1g0441 . 8 110 AS2 family AT2G45420 65.0 3.7e-37 152.1
HCH9g1382 . 31 146 AS2 family AT3G03760 89.7 1.3e-53 206.8
HCH13g1200 . 36 137 AS2 family AT3G03760 80.4 2.2e-40 162.9
HCH5g1304 . 6 115 AS2 family AT3G03760 70.9 5.4e-39 158.3
HCH5g0079 . 12 129 AS2 family AT3G03760 64.4 3.5e-38 155.6
HCH5g0078 . 2 111 AS2 family AT3G03760 69.1 4.6e-38 155.2
HCH13g1199 . 1 203 AS2 family AT4G00210 51.3 8.5e-51 197.2
HCH13g1200 . 36 147 AS2 family AT4G00210 71.4 1.0e-43 173.7
HCH9g1382 . 33 134 AS2 family AT4G00210 73.5 1.3e-38 156.8
HCH5g0078 . 2 107 AS2 family AT4G00210 67.9 2.2e-38 156.0
HCH5g1304 . 3 116 AS2 family AT4G00210 61.4 1.4e-37 153.3
HCH5g0079 . 11 120 AS2 family AT4G00210 62.7 5.3e-37 151.4
HCH5g1307 . 2 107 AS2 family AT4G00210 65.1 5.3e-37 151.4
HCH13g1199 . 1 203 AS2 family AT2G45410 52.2 4.9e-47 184.5
HCH13g1200 . 36 142 AS2 family AT2G45410 74.8 7.1e-46 180.6
HCH9g1382 . 6 134 AS2 family AT2G45410 61.2 8.4e-39 157.1
HCH5g1304 . 3 116 AS2 family AT2G45410 60.5 4.2e-38 154.8
HCH5g0078 . 7 102 AS2 family AT2G45410 69.8 1.0e-36 150.2
HCH1g0441 . 1 112 AS2 family AT5G06080 75.9 4.3e-45 177.9
HCH4g1484 . 19 124 AS2 family AT3G13850 76.4 8.7e-42 167.5
HCH9g0366 . 1 179 AS2 family AT1G68510 60.6 1.2e-58 223.4
HCH1g0771 . 1 225 AS2 family AT1G68510 50.4 1.5e-53 206.5
HCH8g1172 . 1 160 AS2 family AT1G68510 63.7 1.5e-53 206.5
HCH14g0354 . 1 104 AS2 family AT1G68510 62.5 6.0e-39 157.9
HCH12g0564 . 1 104 AS2 family AT1G68510 65.4 1.3e-38 156.8
HCH9g0366 . 1 279 AS2 family AT1G67100 52.3 2.5e-69 258.8
HCH8g1172 . 1 135 AS2 family AT1G67100 75.0 1.3e-57 219.9
HCH1g0771 . 1 132 AS2 family AT1G67100 71.2 6.6e-54 207.6
HCH14g0354 . 1 110 AS2 family AT1G67100 66.4 4.8e-44 174.9
HCH12g0564 . 1 110 AS2 family AT1G67100 66.4 5.8e-42 167.9
HCH9g0366 . 1 279 AS2 family AT3G02550 58.9 1.8e-79 292.7
HCH8g1172 . 1 212 AS2 family AT3G02550 57.0 2.8e-61 232.3
HCH1g0771 . 1 152 AS2 family AT3G02550 61.9 1.3e-50 196.8
HCH14g0354 . 1 104 AS2 family AT3G02550 68.3 8.0e-40 161.0
HCH12g0564 . 1 110 AS2 family AT3G02550 62.7 1.7e-37 153.3
HCH14g0354 . 1 223 AS2 family AT5G67420 60.0 4.4e-72 268.1
HCH12g0564 . 1 122 AS2 family AT5G67420 69.7 5.3e-49 191.4
HCH9g0366 . 3 122 AS2 family AT5G67420 62.5 3.9e-44 175.3
HCH8g1172 . 3 112 AS2 family AT5G67420 64.5 2.0e-40 162.9
HCH1g0771 . 3 106 AS2 family AT5G67420 65.4 2.6e-40 162.5
HCH14g0354 . 1 222 AS2 family AT3G49940 59.3 1.0e-68 256.9
HCH12g0564 . 1 131 AS2 family AT3G49940 67.9 8.9e-49 190.7
HCH9g0366 . 3 156 AS2 family AT3G49940 54.1 1.0e-44 177.2
HCH1g0771 . 3 106 AS2 family AT3G49940 68.3 1.2e-40 163.7
HCH8g1172 . 3 112 AS2 family AT3G49940 64.5 5.8e-40 161.4
HCH14g0354 . 1 223 AS2 family AT4G37540 57.5 1.7e-68 256.1
HCH1g0771 . 3 108 AS2 family AT4G37540 67.0 1.6e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000542 3 3 2 4 5 3 5 3 3 3 3 3 5 4 3 5 3 4 5 3 4 5 3 3 4 4 2 3 4 5 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33234 PF03195 LOB 2.40E-40 No_clan HCH TF