Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g1152 | ATGAGTACGGAAGGCAGTGATACGAACGCCGCCGTCTCCTCTCGTTCTCATTCTCAATCCCCTTCTTCTTCTTCATCTCCACCGCCGCCGCCGCCAATTATTCTTAGTCCTTGTGCGGCGTGTAAGATTTTGAGGCGGAGATGTGCTGATAGATGTGTATTGGCGCCCTATTTCCCGCCCACTGAGCCGGCGAAATTCGCTATCGCTCATCGAGTTTTTGGCGCTAGCAATATCATCAAGTTCTTGCAGGAACTGCCGGAGACTCAGAGGGCAGATGCAGTAAGTAGTTTAGTTTATGAAGCAAGTGCAAGAATCAGAGATCCTGTATATGGATCTGCAGGGGCCATTTGCCTTCTTCAAAAGCAAGTCAGTGAGCTTCAAGCACAGCTAGCCAAGGCCCAAGCCGAGCTCGTCAATATGCATTGCCAACATTCCAATCTGGTGGCCTTTATTTGCAGGGAGTTTTCTCAATCTCATCTCTCAGTTGAAGAATTCAATCCCAGCCCTGAAAATAGCTACCAAAATATGAGTATTAATCCAACCTTCTTTGAAGATAGCAATATAAACCCTTTGTGGGAACCTCTATGGACTTGA | 594 | 47.14 | MSTEGSDTNAAVSSRSHSQSPSSSSSPPPPPPIILSPCAACKILRRRCADRCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPETQRADAVSSLVYEASARIRDPVYGSAGAICLLQKQVSELQAQLAKAQAELVNMHCQHSNLVAFICREFSQSHLSVEEFNPSPENSYQNMSINPTFFEDSNINPLWEPLWT | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 54160016 | 54161943 | + | evm.model.ptg000010l.352 | HCH2g1152 | 540377 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g1152 | 197 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 36 | 163 | - | - | |
HCH2g1152 | 197 | ProSiteProfiles | LOB domain profile. | 36 | 137 | IPR004883 | - | |
HCH2g1152 | 197 | Coils | Coil | 123 | 143 | - | - | |
HCH2g1152 | 197 | Pfam | Lateral organ boundaries (LOB) domain | 37 | 134 | IPR004883 | - | |
HCH2g1152 | 197 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
HCH2g1152 | 197 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g1152 | HCH-Chr2:54160016 | HCH3g1271 | HCH-Chr3:48172352 | 4.90E-58 | dispersed | |
HCH1g0528 | HCH-Chr1:54215123 | HCH2g1152 | HCH-Chr2:54160016 | 1.80E-48 | wgd | |
HCH2g1152 | HCH-Chr2:54160016 | HCH3g1270 | HCH-Chr3:48096045 | 1.80E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33234 | PF03195 | LOB | 2.40E-40 | No_clan | HCH | TF |
Pathway information
