Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1164 ATGGAAATTGATCTGAACCAAACAGTGACTGAGGTGGGGAAGAATGCATTTTGCAATGGGAATTGTGAAGAGGGTCATTGCAATTGTTGTTTATCTTCTTCAACTTCCTCATGTTCTTCAAATTCATCTCCAACTCCTGTCTCTTCTTCCACTTATTTGGAGCTGTGGCATGCTTGTGCTGGTCCTCTTACCTCATTGCCTAAGAAAGGGAATGTAGTTGTCTACTTCCCACAAGGCCACCTAGAACAAATTGCCTCCTCAGCCTCTCCCTTTTCTCCCTTGGAAATGCACCCTTTTGATCTCATGCCCCAGATCCTCTGCAGAGTCATCAATGTCCAACTACTTGCTAATAAGGAGAATGATGAAGTGTATACCCAACTTAGTTTGCTTCCTTTGCCAGAGTTGTTGGGAACTGATCTTGGAGGCAAACAACTCGAGGAATTGGCTTCGAATGGACCAGATGGAGATGCAAACGGAGCGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACGCTTACTGCATCCGATACTAGCACACATGGAGGATTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTATACTCAGCTTAGACCGTATCAAGAGCTCATAGCAAAGGATTTGCATGGTGTGGAGTGGAGATTTAAACATATTTACAGAGGCCAGCCTCGGCGGCATTTGCTCACTACTGGGTGGAGTATTTTTGTTAGTCAAAAGAATCTCATTTCTGGGGATGCAGTGCTCTTTTTAAGGGGTGAAAATGGAGAGCTGAGGTTGGGAATAAGAAGGGCAGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGATGGAAACCAAAATACTGGTGCAAATGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCATGTTTGATGTTTTTTACAATCCAAGGGCATATCATGCACAGTTTGTCATTTCTGTTCAGAAGTATGTGAAAAGTATCACCAATCCAGTGACTGTTGGCACAAGATTTAAAATGAGATTTGAAATGGACGATTCCCCGGAAAGAAGGTTTAGTGGCGTAGTGGTTGGAATTGGTGACATGGATCCCTTTAGATGGCCTAACTCGAAGTGGAGATGCTTGATGGTCCGGTGGGACAAAGACAGCGATCATCAAGAACGTGTTTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCTTCACCAAGGCTAAAGAAACTGAGGACCAGTCTACAAGCAACCCCACCCAATAATACCTATACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCTGTTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTTTTGTATCACCCTTCTATGGATGTGATACTGCAAAGCGATCACTGGAGTTTGAGATGCGATCTTCTCCACTACAAAATCAAGCAGCCGGTGGAGTTGAAAAATGTAATATCGGTGACTATGTAAAGGTTCATACGAACTCTTCTTTCACAGGCTTTACGGAATCTGATAGATTCCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACAAGAAAAGCAGAATATAGTTTAGGTGTTTGGGGAAAGTTCAACCTCGGTGACAATCCTTATAACCCGTTTCAATCATCTAATTCCGGTTTTTATCAAGTAGCATCAAATGGTACTCAAAACATGTATTTCCCTACTGGTAAAATTTACAGCACTGGTCAAGCCCCCATGATGCGCCCTAATGATAACAACTTTCCAATGGAGAATGCCTTGTTCAATCCATCTCCTGTCAATTCTAGTGTAATCAGGACTAAAATGGAAAGGGTTAATCGTTTACTTGATCATGAAACTCTGGGATTAGTTGCGGTTCCTCCAACTTCAGGGTCAAATTTGAGGAATTCAAAGGATGAAAACATAAATGGAAATACAAGTAGCTGTAAACTTTTTGGCTTCTCCTTGACTGCAGAAACAGCTACAAACTCACAAAGCTCAGGGAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCTTGGTAGGAAGAGCTATTGATCTCTCCAGACTGAATGGCTATACTGACTTGCTCACCGAACTGGAGCGGTTATTTAGCATGGAAGGTCTCTTAAAAGATCCTGATAAAGGCTGGCGAGTATTGTACACTGACATTGAGAATGATGTAATGGTCGTTGGGGATTATCCATGGCGTGATTTCTGTGATGCTGTTTCAAAAATCCATATATACACCCAGGAAGAAGTGGAGAAAATGACAAATGGAATAATGATCAGTGATGATACTCAAAGCTGCCTAGACCAGGCTCCTTTATATATGGAAGCATCTAAATCTTCCTCAGTGGGCCAACCTGATTCTCCCCCAACGTAA 2403 43.11 MEIDLNQTVTEVGKNAFCNGNCEEGHCNCCLSSSTSSCSSNSSPTPVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASSASPFSPLEMHPFDLMPQILCRVINVQLLANKENDEVYTQLSLLPLPELLGTDLGGKQLEELASNGPDGDANGASPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPYQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIDGNQNTGANDLARVVKAISTKSMFDVFYNPRAYHAQFVISVQKYVKSITNPVTVGTRFKMRFEMDDSPERRFSGVVVGIGDMDPFRWPNSKWRCLMVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQATPPNNTYTGRGGFMDFEDSVRSSKVLQGQENVGFVSPFYGCDTAKRSLEFEMRSSPLQNQAAGGVEKCNIGDYVKVHTNSSFTGFTESDRFLKVLQGQEICSLRPPTRKAEYSLGVWGKFNLGDNPYNPFQSSNSGFYQVASNGTQNMYFPTGKIYSTGQAPMMRPNDNNFPMENALFNPSPVNSSVIRTKMERVNRLLDHETLGLVAVPPTSGSNLRNSKDENINGNTSSCKLFGFSLTAETATNSQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLLTELERLFSMEGLLKDPDKGWRVLYTDIENDVMVVGDYPWRDFCDAVSKIHIYTQEEVEKMTNGIMISDDTQSCLDQAPLYMEASKSSSVGQPDSPPT 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54214162 54219886 - evm.model.ptg000010l.340 HCH2g1164 540389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1164 800 FunFam Auxin response factor 333 403 - -
HCH2g1164 800 Gene3D - 334 403 - -
HCH2g1164 800 CDD B3_DNA 168 270 IPR003340 GO:0003677(InterPro)
HCH2g1164 800 SUPERFAMILY CAD & PB1 domains 676 754 - -
HCH2g1164 800 Gene3D - 671 764 - -
HCH2g1164 800 Pfam Auxin response factor 297 377 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH2g1164 800 FunFam Auxin response factor 168 272 - -
HCH2g1164 800 MobiDBLite consensus disorder prediction 145 168 - -
HCH2g1164 800 Pfam AUX/IAA family 667 760 IPR033389 -
HCH2g1164 800 ProSiteProfiles B3 DNA-binding domain profile. 170 272 IPR003340 GO:0003677(InterPro)
HCH2g1164 800 SUPERFAMILY DNA-binding pseudobarrel domain 164 276 IPR015300 -
HCH2g1164 800 ProSiteProfiles PB1 domain profile. 675 759 IPR053793 -
HCH2g1164 800 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 765 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH2g1164 800 Pfam B3 DNA binding domain 170 271 IPR003340 GO:0003677(InterPro)
HCH2g1164 800 SMART B3_2 170 272 IPR003340 GO:0003677(InterPro)
HCH2g1164 800 Gene3D - 168 272 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0950 HCH-Chr14:37009119 HCH2g1164 HCH-Chr2:54214162 7.70E-133 dispersed
HCH2g1164 HCH-Chr2:54214162 HCH8g1520 HCH-Chr8:49320730 6.90E-135 dispersed
HCH2g1164 HCH-Chr2:54214162 HCH3g0834 HCH-Chr3:6324251 8.20E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33235 PF02309 AUX_IAA 1.20E-06 CL0072 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1164 K14486 - csv:101212503 1358.58