Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1166 ATGGCCGGAGGCGGCGGTGGAAGATCTTTAGAAGAAACTCCAACATGGGCGGTCGCCGCAGTTTGTTTTGTCTTAGTTCTAATTTCCATTATCATCGAACACATTCTCCATCTCATCGGAAAGTGGCTAAATAAGAAGCACAAACGAGCTCTCTATGAAGCGCTCGAGAAAATCAAATCAGAGCTTATGCTATTAGGGTTCATATCGTTGTTATTAACGGTCGGGCAAAGCTTGATCACTAACATTTGTATATCGCCGGAAGTTGCCGCCACGTGGCATCCGTGTAGTCAGAAGAAAGAACTCGAATTAACTGAGCAAGAAGATTCGGCTGATTCAGGAAATAACAATCGTCGGAGACTTCTCGCCGTCTCGGAATTCAATGGAACTTTCCGGCGAGTCTTGGCTGCTGGCGGTGGAAGCGATAAATGTGCAGAGAAGAATTTAGTTCCGTTCGTATCAGAAGGAGGAATCCATCAGCTGCATATCTTCATATTTGTGTTGGCTGTTTTCCATGTTCTCTATTGTGTTCTTACTTTGGCCTTGGGGAGAGCCAAGATGGGGAGTTGGAAGTCGTGGGAAAAGGAAACGAGAACCGTGGAGTATCAATTCTCACACGATCCAGAACGATTCAGATTTGCAAGAGATACGTCTTTTGGGAGAAGACATTTGAGCTTTTGGACCAAATCACCTTTCCTCATATGGATCGTATGTTTCTTCAGACAATTTGTTAGGTCGGTTCCTAAGGTCGATTACTTGACCTTAAGACATGGTTTTGTCATGGCACATTTAGCACCTCACAGTGATCAGAAATTTGATTTTCAAAAATACATTAAACGCTCCCTCGAAGAAGATTTCAAGGTCGTCGTCAGTATTAGCCCTCCGATCTGGTTCTTCGCCGTCCTATTCTTACTCTTCAACACTCACGGATGGAGAGCTTATCTATGGCTACCCTTTGTCCCACTAATTATAATATTACTGGTGGGGACAAAGTTGCAAGTGATAATAACAAAAATGGCATTGAGAATACAAGAGAGAGGAGAAGTAGTAAAAGGGGTGCCGGTGGTGGAGCCAGGGGATGATCTCTTTTGGTTCAATCGCCCTAGACTCATTCTCTATCTTATCAACTTCGTGCTCTTTCAAAATGCCTTTCAGCTAGCTTTCTTTGCTTGGACTTGGAAAGAATTTGGGATGAAATCTTGTTTCCATGAGCATACTGAGGATTTGATCATAAGAATTACAATGGGGGTTCTCGTGCAAATTCTGTGCAGTTATGTCACTTTACCCCTTTATGCTCTAGTCACTCAGATGGGTTCAACAATGAAACCAACAATATTCAACGAGAGAGTGGCTACGGCATTAAGAAATTGGCACCACACAGCTCGAAAACAGATAAAACAGAATCGGGGCTCCATCACACCCATGTCGAGCCGACCCGCAACCCCTTCCCACCACATGTCTCCGGTTCATCTCCTCCGCCACTACCGGAGCGAAATGGATAGCGTCCAAACTTCTCCAAGAAGATCTAATTTCGATAACGAGCAATGGGATGCGGAGTCGCCGTCGCCGTCGTACCACCACCACTACCGCCCCCAAGGCGACGGCTCCACTTCTTACAGCCACCACCACCATCATGATGTGGAGCTCGGTGAACTGGAGCATAATAAGGATTTACCCGATCCGGATCCGACCCAAGTAGGTCCCGTTCGAGAAACGAGTATAGAGGAGGAACATGAGATCCGTATAATGGGACCCAATGAGTTTTCTTTTGATAAAAGAGTTGGTCGATGA 1788 45.41 MAGGGGGRSLEETPTWAVAAVCFVLVLISIIIEHILHLIGKWLNKKHKRALYEALEKIKSELMLLGFISLLLTVGQSLITNICISPEVAATWHPCSQKKELELTEQEDSADSGNNNRRRLLAVSEFNGTFRRVLAAGGGSDKCAEKNLVPFVSEGGIHQLHIFIFVLAVFHVLYCVLTLALGRAKMGSWKSWEKETRTVEYQFSHDPERFRFARDTSFGRRHLSFWTKSPFLIWIVCFFRQFVRSVPKVDYLTLRHGFVMAHLAPHSDQKFDFQKYIKRSLEEDFKVVVSISPPIWFFAVLFLLFNTHGWRAYLWLPFVPLIIILLVGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLILYLINFVLFQNAFQLAFFAWTWKEFGMKSCFHEHTEDLIIRITMGVLVQILCSYVTLPLYALVTQMGSTMKPTIFNERVATALRNWHHTARKQIKQNRGSITPMSSRPATPSHHMSPVHLLRHYRSEMDSVQTSPRRSNFDNEQWDAESPSPSYHHHYRPQGDGSTSYSHHHHHDVELGELEHNKDLPDPDPTQVGPVRETSIEEEHEIRIMGPNEFSFDKRVGR 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54237510 54242040 + evm.model.ptg000010l.338 HCH2g1166 540391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1166 595 MobiDBLite consensus disorder prediction 501 519 - -
HCH2g1166 595 PANTHER MLO-LIKE PROTEIN 1 2 516 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH2g1166 595 MobiDBLite consensus disorder prediction 461 485 - -
HCH2g1166 595 MobiDBLite consensus disorder prediction 536 559 - -
HCH2g1166 595 Pfam Mlo family 7 494 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH2g1166 595 MobiDBLite consensus disorder prediction 498 575 - -
HCH2g1166 595 MobiDBLite consensus disorder prediction 465 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0721 HCH-Chr14:35590540 HCH2g1166 HCH-Chr2:54237510 3.10E-137 dispersed
HCH1g0661 HCH-Chr1:55522966 HCH2g1166 HCH-Chr2:54237510 2.20E-196 dispersed
HCH2g1166 HCH-Chr2:54237510 HCH4g0860 HCH-Chr4:5508344 1.30E-135 dispersed
HCH11g0841 HCH-Chr11:39204302 HCH2g1166 HCH-Chr2:54237510 1.20E-88 transposed
HCH12g1081 HCH-Chr12:8186378 HCH2g1166 HCH-Chr2:54237510 1.00E-97 transposed
HCH13g0796 HCH-Chr13:7660504 HCH2g1166 HCH-Chr2:54237510 6.70E-97 transposed
HCH14g0949 HCH-Chr14:37004386 HCH2g1166 HCH-Chr2:54237510 5.10E-131 transposed
HCH2g0293 HCH-Chr2:41922003 HCH2g1166 HCH-Chr2:54237510 5.00E-94 transposed
HCH6g1335 HCH-Chr6:47461147 HCH2g1166 HCH-Chr2:54237510 2.50E-106 transposed
HCH2g1166 HCH-Chr2:54237510 HCH3g1261 HCH-Chr3:47585699 4.80E-250 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1166 K08472 - csv:101212018 1000.35