Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g1168 | ATGAGCGTAATCGATATTATCTTCCGAGTTGATGTTATTTGCAAGAGATATGACAAATACGACGTTGAAAAACAGCGTGAGCTCAATGCCTATGGTGATGATGCCTTTGCTCGCCTATTTGCCGCTGTCGAATTCGAAATTGATGCCACTCTTCAGAAATCTGAACTGGCTTCAACTGAGAAGAATAGAGCTTCTGCGGTTGCGATGAACGCTGAGATACGGAGGAAAAAGGCTCGGTTGATGGACGAAGTGCCGAAGCTACGTAAATTGGCTCAGAAGAAGATCAAAGGGGTTGCGAAAGAAGAGCTCGCGGTCAGAGACGATCTAGTTCTCGGGCTGTCAGAGAGGATTCAAGCAATACCAGATGGTAGTACATCAGCTGCCAAACAATCTGGAGGAGGGGCATCCTCATCATCACATCAAAATATCAAATTTGATTCATCAGATGGAAATTTTGAGAGTGATTTTTTCCAGCAAAGTGAAGAATCGAGTCAATTTCGACAGGAATATGAAATGCGGAAAATGAAACAGGATCAAGGTCTTGATTTCATATCAGAAGGATTGGATACTCTGAAAAATCTGGCACATGATATGAATGAGGAAATGGACAGGCAAGTTCCATTAATCGACGAGATCGATACGAAGGTAGACAATGTGACTTCTGATCTAAAAAACACTAATGTTAGACTTAAGGAAACACTTTTCCAGGTGAGATCCAGCCGAAACTTCTGCATCGATATCATTCTTCTGTGTGTAATTCTTGGAATTGTTTCTTACTTGTACAATATATTGAAGTGA | 798 | 41.23 | MSVIDIIFRVDVICKRYDKYDVEKQRELNAYGDDAFARLFAAVEFEIDATLQKSELASTEKNRASAVAMNAEIRRKKARLMDEVPKLRKLAQKKIKGVAKEELAVRDDLVLGLSERIQAIPDGSTSAAKQSGGGASSSSHQNIKFDSSDGNFESDFFQQSEESSQFRQEYEMRKMKQDQGLDFISEGLDTLKNLAHDMNEEMDRQVPLIDEIDTKVDNVTSDLKNTNVRLKETLFQVRSSRNFCIDIILLCVILGIVSYLYNILK | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 54247173 | 54248763 | + | evm.model.ptg000010l.336 | HCH2g1168 | 540393 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g1168 | 265 | SMART | tSNARE_6 | 166 | 233 | IPR000727 | - | |
HCH2g1168 | 265 | PANTHER | SYNTAXIN | 51 | 251 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
HCH2g1168 | 265 | FunFam | Putative syntaxin-71-like | 171 | 232 | - | - | |
HCH2g1168 | 265 | CDD | SNARE_Qc | 176 | 232 | - | - | |
HCH2g1168 | 265 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 171 | 233 | IPR000727 | - | |
HCH2g1168 | 265 | MobiDBLite | consensus disorder prediction | 122 | 145 | - | - | |
HCH2g1168 | 265 | Pfam | SNARE domain | 208 | 258 | IPR000727 | - | |
HCH2g1168 | 265 | SUPERFAMILY | SNARE fusion complex | 164 | 231 | - | - | |
HCH2g1168 | 265 | Gene3D | - | 171 | 232 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g1168 | HCH-Chr2:54247173 | HCH7g0806 | HCH-Chr7:15192340 | 4.40E-22 | dispersed | |
HCH11g0272 | HCH-Chr11:2469918 | HCH2g1168 | HCH-Chr2:54247173 | 1.50E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH2g1168 | K08506 | - | csv:101211289 | 418.313 |