Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1168 ATGAGCGTAATCGATATTATCTTCCGAGTTGATGTTATTTGCAAGAGATATGACAAATACGACGTTGAAAAACAGCGTGAGCTCAATGCCTATGGTGATGATGCCTTTGCTCGCCTATTTGCCGCTGTCGAATTCGAAATTGATGCCACTCTTCAGAAATCTGAACTGGCTTCAACTGAGAAGAATAGAGCTTCTGCGGTTGCGATGAACGCTGAGATACGGAGGAAAAAGGCTCGGTTGATGGACGAAGTGCCGAAGCTACGTAAATTGGCTCAGAAGAAGATCAAAGGGGTTGCGAAAGAAGAGCTCGCGGTCAGAGACGATCTAGTTCTCGGGCTGTCAGAGAGGATTCAAGCAATACCAGATGGTAGTACATCAGCTGCCAAACAATCTGGAGGAGGGGCATCCTCATCATCACATCAAAATATCAAATTTGATTCATCAGATGGAAATTTTGAGAGTGATTTTTTCCAGCAAAGTGAAGAATCGAGTCAATTTCGACAGGAATATGAAATGCGGAAAATGAAACAGGATCAAGGTCTTGATTTCATATCAGAAGGATTGGATACTCTGAAAAATCTGGCACATGATATGAATGAGGAAATGGACAGGCAAGTTCCATTAATCGACGAGATCGATACGAAGGTAGACAATGTGACTTCTGATCTAAAAAACACTAATGTTAGACTTAAGGAAACACTTTTCCAGGTGAGATCCAGCCGAAACTTCTGCATCGATATCATTCTTCTGTGTGTAATTCTTGGAATTGTTTCTTACTTGTACAATATATTGAAGTGA 798 41.23 MSVIDIIFRVDVICKRYDKYDVEKQRELNAYGDDAFARLFAAVEFEIDATLQKSELASTEKNRASAVAMNAEIRRKKARLMDEVPKLRKLAQKKIKGVAKEELAVRDDLVLGLSERIQAIPDGSTSAAKQSGGGASSSSHQNIKFDSSDGNFESDFFQQSEESSQFRQEYEMRKMKQDQGLDFISEGLDTLKNLAHDMNEEMDRQVPLIDEIDTKVDNVTSDLKNTNVRLKETLFQVRSSRNFCIDIILLCVILGIVSYLYNILK 265
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 54247173 54248763 + evm.model.ptg000010l.336 HCH2g1168 540393
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1168 265 SMART tSNARE_6 166 233 IPR000727 -
HCH2g1168 265 PANTHER SYNTAXIN 51 251 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH2g1168 265 FunFam Putative syntaxin-71-like 171 232 - -
HCH2g1168 265 CDD SNARE_Qc 176 232 - -
HCH2g1168 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
HCH2g1168 265 MobiDBLite consensus disorder prediction 122 145 - -
HCH2g1168 265 Pfam SNARE domain 208 258 IPR000727 -
HCH2g1168 265 SUPERFAMILY SNARE fusion complex 164 231 - -
HCH2g1168 265 Gene3D - 171 232 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1168 HCH-Chr2:54247173 HCH7g0806 HCH-Chr7:15192340 4.40E-22 dispersed
HCH11g0272 HCH-Chr11:2469918 HCH2g1168 HCH-Chr2:54247173 1.50E-99 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1168 K08506 - csv:101211289 418.313