Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1176 ATGGGGAAAGACGTGGAAGTTACGGAGCAAGGAGGAGAATTCCAAGCCAAAGACTACCAAGACCCACCTCCAACTCCTTTCTTCGACATCGAAGAACTCACAAAATGGTCTCTTTACAGAGCCGCCATAGCCGAGTTCATAGCAACCCTTCTCTTCCTTTACATCACCGTCTTAACCGTCATCGGTTACAAGCATCAATCTGACAAAAACCTCACCACTGACCCATGTATCGGTGTCGGAATTCTCGGCATCTCCTGGGCTTTCGGTGGCATGATTTTCATCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGTCACATTAACCCGGCGGTCACTTTTGGGCTGTTTCTGGCGAGGAAGGTGTCTTTGATAAGGGCTTTGTTGTATATAATAGCTCAGTGTCTGGGTGCTATCTGTGGTTGCGGTTTGGTTAAGGGTTTTCAGACAGCTTACTATACTAGATATGGAGGTGGTGCTAATATTTTGAATGATGGATATAATAAAGGAACTGGTTTAGGAGCTGAGATTATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCTGCTACTGATCCTAAGAGGAATGCTAGAGATTCTCATGTTCCTGTATTGGCACCACTGCCAATTGGATTTGCAGTGTTCATGGTTCACTTAGCTACAATTCCAATCACTGGAACTGGAATCAACCCTGCTAGAAGTTTTGGAGCTGCTGTCATCTACAATAAGGATAAGGCCTGGGATGATCAGTGGATTTTCTGGGTTGGTCCATTTATTGGAGCTGCAATTGCTGCATTATACCACCAGTATGTCCTCAGAGCTGCAGCCATTAAAGCTCTTGGATCCTTCAGGAGCAATGCCTAA 861 45.99 MGKDVEVTEQGGEFQAKDYQDPPPTPFFDIEELTKWSLYRAAIAEFIATLLFLYITVLTVIGYKHQSDKNLTTDPCIGVGILGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRALLYIIAQCLGAICGCGLVKGFQTAYYTRYGGGANILNDGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKDKAWDDQWIFWVGPFIGAAIAALYHQYVLRAAAIKALGSFRSNA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54284098 54285252 - evm.model.ptg000010l.328 HCH2g1176 540401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1176 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
HCH2g1176 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g1176 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g1176 286 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g1176 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g1176 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g1176 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g1176 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
HCH2g1176 286 FunFam Probable aquaporin PIP1-2 25 286 - -
HCH2g1176 286 Gene3D Glycerol uptake facilitator protein. 25 286 IPR023271 -
HCH2g1176 286 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
HCH2g1176 286 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g1176 286 CDD MIP 40 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g1176 286 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1176 HCH-Chr2:54284098 HCH9g0590 HCH-Chr9:3974820 6.90E-130 dispersed
HCH2g0514 HCH-Chr2:48862870 HCH2g1176 HCH-Chr2:54284098 1.50E-16 transposed
HCH5g0521 HCH-Chr5:3561664 HCH2g1176 HCH-Chr2:54284098 3.20E-111 transposed
HCH11g0278 HCH-Chr11:2515246 HCH2g1176 HCH-Chr2:54284098 7.70E-121 wgd
HCH2g1176 HCH-Chr2:54284098 HCH9g0588 HCH-Chr9:3961959 1.00E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1176 K09872 - csv:101215300 518.85