Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1180 ATGGCTATGGCTATAGCTCATCATAGAGAAAGCAGTACTGGGAGTATTACAAGGCATCTTGATAGTTCTGGAAAATACGTTCGTTATACATCTGAGCAAGTTGAGGCTCTTGAAAGAGTCTATGCTGAGTGTCCAAAGCCAAGTTCTTTGCGTAGGCAGCAGCTGATCCGAGAGTGTCCTATTCTTTCCAACATCGAGCCTAAGCAGATCAAAGTTTGGTTTCAAAATCGCAGGTGTAGAGAGAAGCAAAGGAAAGAGGCTTCTAGGTTGCAAACTGTGAATAGGAAATTGAATGCTATGAATAAGCTGTTGATGGAGGAGAATGATAGATTGCAGAAACAAGTTTCACAGTTAGTGTGTGAAAATGGATTTATGAGGCAACAATTGCATACGGTGCCAGCAGCAACTGATGCAAGTTGTGATTCTGTGGTCACTACTCCTCAGCCCACTCTAAGAGATGCTAATAACCCAGCTGGACTCCTCTCTATTGCTGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCGAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCAAAGATTGCAGAGATCCTTAAAGATCGTCTATCCTGGTTCCGTGATTGTCGGAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGAACGATCGAACTTGTTTACACACAGGTATATGCTCCAACAACTCTAGCTCCTGCACGTGATTTTTGGACTCTAAGATACACGATAACTTTGGAAAATGGAAGCCTTGTGATTTGTGAGAGATCCCTCTCTGGTTCCGGTGCTGGCCCTAGTGCAGCTGCTGCTGCTCAGTTTGTGAGGGCTGAGATGCTTCCAAGTGGCTATCTGATTCGACCCTGTGAGGGTGGGGGGTCTATCATACATGTAGTGGATCACCTTAATCTTGAGGCATGGAGTGTTCCTGAGGTGCTACGTCCTCTCTATGAATCATCAAAAGTAGTGGCTCAAAAAATGACTATAGCAGCACTGCGCTATATCAGGCAAATAGCTCAGGAGACGAGTGGTGAAGTGGTGTATGGTCTGGGCAGGCAACCTGCTGTTCTGCGAACTTTTAGCCAAAGATTGAGCAGAGGCTTTAATGATGCTGTGAACGGTTTTCATGACAATGGATGGTCATTGATTAATTGTGACGGTGCTGAGGACGTGGTACTCACTGTCAATTCTACAAAAAATTTAGGCACAACATCCAACCCTGCTAATTCCCTAACGTATCCTGGTGGAGTTCTTTGTGCAAAGGCTTCCATGCTGCTCCAAAATGTCCCTCCTGCTGTGCTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATCGATGCATACTCCGCAGCATCCCTAAAATCTAATGCATATGCATATCCAGGTATGAGACCCACAAGGTTTACCGGAAGTCAAATCATCATGCCATTGGGCCACACAATTGAACATGAAGAGTTGCTTGAAGTAATTCGTCTGGAAGGACATCCTCTTGCTCAAGAAGATGCTTTTGTTTCGAGGGACATTCATCTCCTTCAGATATGTACTGGAATTGATGAGAATGCTGTGGGAGCCTGTTCAGAACTCATTTTTGCCCCAATTGACGAGATGTTTCCAGATGACGCGACACTTTTGCCGTCTGGCTTCCGAATCATCCCATTAGATTCCAGAACAAGTGATGCTAAAGGTACAATGACTTCGCAACGGACCCTGGATCTAACATCCAGTCTTGAAGTGGGCTCAGGAGCAGGCCATAGTGCTGGTGATGCGTCGTCGAGTCAGAGCTCTAGATCAGTGTTAACTATTGCCTTCCAGTTTCCTTTTGAAAGCAGCATGCAGGATAATGTAGCAAACATGGCACACCAGTATGTACGCAGTGTCATTTCTTCTGTGCAGAGAGTTGCCATGGCTATATCTCCAACTGGGTCTAGCCCAGCTCTAGGTCCAAAGCTAGCTCCTGGTTCACCAGAAGCTCTTACTCTGGCAGATTGGATATGCAAGAGCTATAGCTACCAATTGGGAGCAGAGTTGATTAGATCAGATTCATTGGAAAGTGATTCACTGTTGAAAAATCTCTGGATTCATCAGGATGCTGTATTATGTTGTTCGTTGAAGTCACTGCCAGTTTTCACCTTTGCAAACCAAGCAGGGCTTGATATGTTGGAGACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAGATTTTTGACGAGTCTGGACGCAAAGCTCTGTGTGCTGATTTTCCCAAATTGATGCAGGAGGGATTTGTGTACTTACCTGGTGGAATCTGTACATCGACAATGGGGCGGCATGTTTCATATGAACAAGCCATTGCATGGAAAGTCCTTGAGCCAGATGAGACCACAGTCCATTGCCTTGCCTTTTCCTTCATAAACTGGTCTTTTGTTTGA 2529 45.51 MAMAIAHHRESSTGSITRHLDSSGKYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTVPAATDASCDSVVTTPQPTLRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPSKIAEILKDRLSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVICERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHVVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFHDNGWSLINCDGAEDVVLTVNSTKNLGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAASLKSNAYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPLAQEDAFVSRDIHLLQICTGIDENAVGACSELIFAPIDEMFPDDATLLPSGFRIIPLDSRTSDAKGTMTSQRTLDLTSSLEVGSGAGHSAGDASSSQSSRSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPTGSSPALGPKLAPGSPEALTLADWICKSYSYQLGAELIRSDSLESDSLLKNLWIHQDAVLCCSLKSLPVFTFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFPKLMQEGFVYLPGGICTSTMGRHVSYEQAIAWKVLEPDETTVHCLAFSFINWSFV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54309966 54315279 + evm.model.ptg000010l.324 HCH2g1180 540405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1180 842 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
HCH2g1180 842 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
HCH2g1180 842 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
HCH2g1180 842 Gene3D - 19 91 - -
HCH2g1180 842 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
HCH2g1180 842 CDD bZIP 77 116 - -
HCH2g1180 842 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
HCH2g1180 842 CDD START_ArGLABRA2_like 157 373 - -
HCH2g1180 842 SMART START_1 162 372 IPR002913 GO:0008289(InterPro)
HCH2g1180 842 Gene3D - 197 379 IPR023393 -
HCH2g1180 842 Coils Coil 80 121 - -
HCH2g1180 842 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
HCH2g1180 842 Pfam MEKHLA domain 698 841 IPR013978 -
HCH2g1180 842 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289(InterPro)
HCH2g1180 842 Pfam START domain 163 371 IPR002913 GO:0008289(InterPro)
HCH2g1180 842 SUPERFAMILY Bet v1-like 162 374 - -
HCH2g1180 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 842 IPR044830 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1123 HCH-Chr14:38147369 HCH2g1180 HCH-Chr2:54309966 0.00E+00 dispersed
HCH2g1180 HCH-Chr2:54309966 HCH3g0857 HCH-Chr3:6704258 0.00E+00 dispersed
HCH2g1180 HCH-Chr2:54309966 HCH3g1240 HCH-Chr3:46484562 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33237 PF01852 START 6.00E-47 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1180 K09338 - csv:101215773 1551.18