Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1183 ATGAAAGAGGCAGAGAAAAGTTTAGATCCTCAACTATGGCATGCGTGTGCTGGAGGCATGGTTCAGATGCCTTTGATTAACTCTAAAGTCTTCTACTTCCCTCAAGGCCATGCCGAGCACGCTCAGGCGAACGTCGATTTCACGGCCTCCCTCCGTATCCCTGCCCTCATTCCTTGTCGGGTTCTTGCTGTGAAGTTCTTGGCTGACCCTGAAACAGATGAAGTTTTTGCTAATGTGAGGTTAGTTCCTTTGGGGAAAAATGAGCTTAATTTTGATGAAGATGGTACTTTTGGGAGTAATGGGCCTGAGAATATGGAAAAACCTGCTTCTTTTGCTAAGACATTGACTCAATCCGATGCCAATAACGGTGGTGGCTTCTCCGTTCCGAGGTATTGTGCAGAGACGATATTCCCTCGGCTAGATTACACGGCAGATCCACCGGTGCAGACGGTGATTGCTAAGGATGTTCACGGCGAGGTTTGGAAGTTTAGGCATATTTATAGAGGGACACCTCGCCGGCATTTGTTGACTACTGGGTGGAGTAGTTTTGTAAATCAGAAGAAGCTGGTTGCTGGTGATTCAATTGTTTTTCTCCGATCCAAAAACGGTGATCTTTGCGTTGGAATTCGGCGAGCCAGGCGGGCAATTGGCTGTGCGTCAGAGCATCCCTATGGTTGGAATCCCGGTCCTGCGAATTGCCTTCCATCCTTTGGTGGACTGACTATGTTTCTGAGAGAAGAAGACAGCAAGTTAACTAGAAATGGATCTTTGATTTCTAGTCATGGTGGCAATTTGAGAGGGAAAGGGAAAGTGAGACCAGAGTCAGTTCTCGAAGCGGCGGCGCTTGCTGCCAGTGGGCAGCCATTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCTGAGTTCTGTGTTAGGGCCTCATCAGTGCGGGCAGCCATGAGGATCCAGTGGTGCTCTGGTATGAGGTTTAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATCAGTTGGTTCATGGGGACCATTGCTTCTGTTCAGGTTGCCGATCCCATCCGCTGGCCTAATTCTCCATGGCGGCTTCTCCAGGTGACATGGGATGAGCCAGACTTGCTCCAAAATGTGAAGCGTGTTAGCCCATGGTTGGTTGAACTGGTATCAAACATGCCCGTCATCCAACTATCACCATTCTCACCGCCAAGAAAGAAGTTTCGACTACCTCAACACCCAGACTTTGCCCTAGATGGCCAATTCCCGTTGTCGTCATTTTCGAGCAATACCCTTAGGCCAAGCAGCCCCATGTGTTGTTTATCTGATAACACTTCTGCAGGCATACAGGGAGCCAGGCATACTCAATTCGGAATATCTTTATCAGATTTCCACCTCAACAACAACCTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGACTTTCACTCTAGAATTTCCAATAGCACAGTTACAGATCAGAGAGACAGCAGTCAAAACTCAGTCTTGCTAACAAGTAAAAGTACTGGTCAAAAGTTGGAAAGATCTGATAGTGTGAAGAAACATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCATTCGTAGCTCTTCCAGTGACTGTGTCTCACAGGCTCTTACCAAGAAAAGCTCCTCAGATGTGAATCTGGAGAGAGTAAAGTTTCTATCTGATGGCTCGGGATCCACTTTTAAGCCGCAAGTTTCACCGTATAAGTCACCCAGAGCAGGATTTCCATGGTATCAGGGTTATCAATCCACTGAACTTGACATAGACACTGGTCACTGCAAAGTATTTATGGAGTCAGAAGATGTAGGCCGGACGCTGAACCTTTCTGTTATCGGTTCTTATGAAGAACTATATAGGAGGCTGGCAAACATGTTCGGAATGGAAAAACCAGACATTCTCAGCCATGTGCTGTACCAAGATGCAACAGGTGCCGTCAAACAAGCTGGGGATAAACCATTCAGTGATTTTATTAAAACAGCTAGAAGACTGACCATTCTGACAGACCCGGGGTCCGACAAGATTGGAAGGACATTGATCGATGGAATGCGTAGTACTGAAAACGGGTTAGATGCTTCAAATAAGACCGGCCCCTTGAGCATATTTGCCTAG 2139 46.94 MKEAEKSLDPQLWHACAGGMVQMPLINSKVFYFPQGHAEHAQANVDFTASLRIPALIPCRVLAVKFLADPETDEVFANVRLVPLGKNELNFDEDGTFGSNGPENMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRSKNGDLCVGIRRARRAIGCASEHPYGWNPGPANCLPSFGGLTMFLREEDSKLTRNGSLISSHGGNLRGKGKVRPESVLEAAALAASGQPFEVVYYPRASTPEFCVRASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFALDGQFPLSSFSSNTLRPSSPMCCLSDNTSAGIQGARHTQFGISLSDFHLNNNLQLGLVPSSFQQLDFHSRISNSTVTDQRDSSQNSVLLTSKSTGQKLERSDSVKKHQFLLFGQPILTEQQIIRSSSSDCVSQALTKKSSSDVNLERVKFLSDGSGSTFKPQVSPYKSPRAGFPWYQGYQSTELDIDTGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDPGSDKIGRTLIDGMRSTENGLDASNKTGPLSIFA 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54337450 54340514 - evm.model.ptg000010l.321 HCH2g1183 540408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1183 712 Gene3D - 317 390 - -
HCH2g1183 712 FunFam Auxin response factor 317 390 - -
HCH2g1183 712 Gene3D - 598 684 - -
HCH2g1183 712 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677(InterPro)
HCH2g1183 712 Gene3D - 109 212 IPR015300 -
HCH2g1183 712 CDD B3_DNA 110 211 IPR003340 GO:0003677(InterPro)
HCH2g1183 712 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677(InterPro)
HCH2g1183 712 FunFam Auxin response factor 109 213 - -
HCH2g1183 712 Pfam Auxin response factor 279 362 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH2g1183 712 SMART B3_2 111 213 IPR003340 GO:0003677(InterPro)
HCH2g1183 712 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 681 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH2g1183 712 SUPERFAMILY DNA-binding pseudobarrel domain 108 217 IPR015300 -
HCH2g1183 712 ProSiteProfiles PB1 domain profile. 600 680 IPR053793 -
HCH2g1183 712 MobiDBLite consensus disorder prediction 486 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0395 HCH-Chr13:2702701 HCH2g1183 HCH-Chr2:54337450 1.70E-230 dispersed
HCH2g1183 HCH-Chr2:54337450 HCH3g0834 HCH-Chr3:6324251 1.90E-72 dispersed
HCH4g0194 HCH-Chr4:1155945 HCH2g1183 HCH-Chr2:54337450 4.50E-112 transposed
HCH2g1183 HCH-Chr2:54337450 HCH9g0585 HCH-Chr9:3937229 2.50E-261 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33238 PF02362 B3 7.10E-22 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1183 K14486 - csv:101216500 1259.97