Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1187 ATGGCTTATATTAATTCAAGATCTGTCAGATTCCAAGAGGATCTTGAATCATCAAGCCGGCCTGCTGTCAATGGTGGTGGTGTAACTAAGATCATATACAACATCGACGGCACACAAATACCGGAACCAAGCAGCAAGAAAATGGAGGGGGCTTTTGGGAAGTCTGGAAAATCCTTGAGAGCTAAAGTTTTGTCTAGAGTTTTCTCTGAGGATTATGAGAGAGTACAGAGAAAAATATTGGATCCTAGGGGACAAGTCATTCGGAGATGGAATAAGATATTTTTAGTAGCTTGTTTACTGTCTTTGTTTGTAGATCCTCTCTTCTTTTATTTGCCTGAGGTACGGGATAATGTGTGCATTAATATAGGAGTAGGTCTTGAAGTCGTCCTTACAACTATAAGATCAATAGCTGATATTTTCTACACAATTCAGATTTTCCTTAAATTTCGTACAGCTTACGTCGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGACCCTTGTAAGATAGCATTAAGGTATCTATACCATGGTTTCTGGATTGATTTCATTGCAGCCCTGCCAATTCCTCAGGTACTGATTTGGATTGTAATCCCCAACCTTAGCGGTTCAACAATGACAAACACCAAGAACTTCCTTAGGTTCATTCTCATATTTCAGTACCTCCCAAGACTTTTTCTCATATTTCCACTCTCATCACAAATTGTTAAGGCCACTGGTGTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACTTAATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACTTTCTTTCAATTGAGCGACAAGAAGCGTGCTGGAGAATACTATGTAAGCATGAAAAATCATGTAACGATGGATTCTTCGACTGTCGCAGAGTTGAGGACCCTCAGAGAAACTCATGGTTTAAGACTAGCAACATTACAAATTTGTGCAATCCAAATAACTCCGATTATCAATTTGGCATATTCGGCGATGCAGTAATCTTCGACGTCACAACCTCACCATTTTTCAACAAGTATTTCTACTGTCTTTGGTGGGGCCTAAAAAATCTAAGTTCTTTGGGACAAAATCTTGCCACTAGCACTTATGTTGGAGAAATAATTTTTGCCATAATTATGGCTACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATATCTCCAATCTACGACGGTCCGATTAGAAGAGTGGAGGATAAGGAGAACTGATACAGAACAATGGATGCATCATAGGCAACTACCTCCAGAACTCAGACAATCTGTACGCAAGTATGACCAGTATAAATGGATAGCAACTAGAGGAGTTGATGAAGAGTCTCTACTCAGAGGCCTTCCGTTGGATCTCCGAAGAGATATAAAACGCCACCTCTGCCTCGACCTCGTTCGAAGGGTTCCATTATTTGATCAAATGGATGAAAGAATGCTTGATGCGATATGTGAGAGGCTTAAACCTGCCTTGAGCACAGAAGGGACATATCTAGTACGAGAAGGTGATCCAGTTAACGAAATGCTATTCATAATAAGAGGACATCTCGATTCCTACACTACAAACGGCGGCCGAACCGGGTTTTTCAATTCCTGTCGTATAGGCCCAGGTGATTTTTGCGGTGAAGAGCTGCTGACATGGGCACTGGACCCTCGTCCAAGTGTGGTATTTCCTTCTTCCACAAGAACAGTCAAAGCCATCTCAGAAGTAGAAGCATTTGCTCTCATAGCAGAAGACTTGAAATTTGTATCTTCCCAGTTTAGAAGACTCCACAGCAAACGACTAAGACACAAGTTCAGATTCTATTCACATCAATGGAGAACATGGGCCGCGTGCTTCGTTCAGGCAGCATGGCGGCGATATAAGCGACGCAAAGAGCGAGCTGAGCTAAGGGCCAGAGAGAGCAATGCAGTAACTGAGGCTGAATCTCCATATACACCAAGACTTGAATCAAACTTGGGTTTGCACTCAACAACCACTAGAAGAGGAATAAATAAGCGTTCTGTATCAGATGCTGGTGTTGTCAGTTCCTTGCAAAAACCAGAAGAGCCTGACTTCTCCATGGTTGAAGAATGA 2106 42.17 MAYINSRSVRFQEDLESSSRPAVNGGGVTKIIYNIDGTQIPEPSSKKMEGAFGKSGKSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLLSLFVDPLFFYLPEVRDNVCINIGVGLEVVLTTIRSIADIFYTIQIFLKFRTAYVAPSSRVFGRGELVIDPCKIALRYLYHGFWIDFIAALPIPQVLIWIVIPNLSGSTMTNTKNFLRFILIFQYLPRLFLIFPLSSQIVKATGVVTQTAWAGAAYNLILYMLASHVLGACWYFLSIERQEACWRILCKHEKSCNDGFFDCRRVEDPQRNSWFKTSNITNLCNPNNSDYQFGIFGDAVIFDVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTYVGEIIFAIIMATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRKYDQYKWIATRGVDEESLLRGLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVFPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKRLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRARESNAVTEAESPYTPRLESNLGLHSTTTRRGINKRSVSDAGVVSSLQKPEEPDFSMVEE 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54377065 54380061 - evm.model.ptg000010l.317 HCH2g1187 540412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1187 701 SUPERFAMILY Voltage-gated potassium channels 81 403 - -
HCH2g1187 701 FunFam Cyclic nucleotide-gated ion channel 1 408 472 - -
HCH2g1187 701 SMART cnmp_10 481 609 IPR000595 -
HCH2g1187 701 Pfam Cyclic nucleotide-binding domain 504 564 IPR000595 -
HCH2g1187 701 Gene3D Jelly Rolls 479 599 IPR014710 -
HCH2g1187 701 CDD CAP_ED 481 612 IPR000595 -
HCH2g1187 701 MobiDBLite consensus disorder prediction 649 685 - -
HCH2g1187 701 ProSiteProfiles cAMP/cGMP binding motif profile. 481 566 IPR000595 -
HCH2g1187 701 MobiDBLite consensus disorder prediction 642 701 - -
HCH2g1187 701 Gene3D Helix hairpin bin 408 472 - -
HCH2g1187 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 60 653 - -
HCH2g1187 701 Gene3D - 90 405 - -
HCH2g1187 701 FunFam Cyclic nucleotide-gated ion channel 1 479 597 - -
HCH2g1187 701 Pfam Ion transport protein 89 408 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g1187 701 SUPERFAMILY cAMP-binding domain-like 411 606 IPR018490 -
HCH2g1187 701 PRINTS EAG/ELK/ERG potassium channel family signature 145 154 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH2g1187 701 PRINTS EAG/ELK/ERG potassium channel family signature 376 387 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH2g1187 701 PRINTS EAG/ELK/ERG potassium channel family signature 350 367 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH2g1187 701 PRINTS EAG/ELK/ERG potassium channel family signature 262 272 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH2g1187 701 PRINTS EAG/ELK/ERG potassium channel family signature 444 451 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH2g1187 701 PRINTS EAG/ELK/ERG potassium channel family signature 394 403 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1187 HCH-Chr2:54377065 HCH8g0989 HCH-Chr8:45991506 9.40E-213 dispersed
HCH6g0713 HCH-Chr6:40557755 HCH2g1187 HCH-Chr2:54377065 1.10E-107 transposed
HCH2g1187 HCH-Chr2:54377065 HCH9g0582 HCH-Chr9:3892858 1.10E-237 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1187 K05391 - csv:101210775 1242.25