Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1189 ATGAAACACAGAGTGGCTGCCACCTCTATTTTTTTCATAAGCTTTGTCTTGGTGCAACAAGCCTTTGGTGATCGTATTTCTAATACTTCTATCCCTGGAAAGTGGTCGTGTAAATGCTTTTCTTCATTCCAAGAAAACCAGAGTTTAGTACTTGGTGCAAACTGTTCCACATCCTGTTCATGTACCCCAGATGCTGGGGGAATTGGATTGTGGACATGCATCTGTGCAGCTGATGGGTTTCCTAAAGTAGCAGCTGATGACCGTGATCCTAACTGTTTTACATCCTGCAACTGCTCTTCTGGATTGCTTCCTGACTTACCATCCTCTAAAAAGCATATTTCAAGCAATGTGGTTGTGATTATTCTCTTATTATGTGTAATAACCACAACATTAGCATTTCTCGCTTCAGTGGTTTTCTATCTTTCTCGAAGGGACAAGTGTCAAATTCGACCTCCAATGTTTTTATTAGATCGGCAAATGAGCTGCAACAGCTTGACCAACTTAATAAGTCACAACAGTTCTTCAATACCAGATAGCAATACCCTTTTAGGTTCCCCTGTCAATAACATCAAAGGATGCTTTTACATGAACTCTTGCTTGAATGGGACTAGAACTAGGAGTATGTGTGGGATCATCATCCAATTCTCATACCCAGAGTTGGAAAGTGCAACAAATAAGTTTTCAACCTCCAATCTTGTAGGACTTGGGGGAAGTAGCTTTGTTTATCGTGGTGAGCTGAAGGATGGTAGGACAGTGGCAGTTAAGCGACTCAATATTCAAGGAGGACCGGATGTGGACTACTTATTCTCGACAGAAATACAATTGTTATCAAGACTTCATCATTGTCATGTGGTGCCTCTACTTGGTTATTGCTTAGAATCGAGAGGGAAACATACTGAGAGGCTTTTGGTATATGAATACATGCCAAAGGGAAATCTACGAGACCGTTTGGATATGACCTCAGGGGAAAAAATGGATTGGGGTACTAGGGTTACAATTGCATTAGGTGCTGCTAGAGGCTTAGAATATCTCCATGAAGCAGCTGCTCCTAGAATTTTGCATAGAGATGTCAAGTCTACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTTGGTATGGCTACAAGGTTAAGAGGTGATGATCTCCCTAGCTGTTCGAGTTCTCCGGCGAGAATGCAGGGGACTTTTGGGTACTTTGCACCGGAGTATGCAATTATTGGAAGAGCCTCTTTAAAGTCTGATGTCTTCAGTTTTGGAGTTGTTCTTCTCGAACTTATAACGGGTCAGCATCCCATCCATAAATCAGCAAGCAAAGGAGAGGAAAGCCTTGTAATATGGGCCGCTCCCAGGTTGCAGAATAGTAGGCGAGTCATAACAGAGTTGCCTGATCCACATTTAAATGGAATGTTCCCTGAAGAAGAGATCCAAATAATGGCTTACTTAGCAAAGGAATGCCTGCTGTTGGATCCTGATGACAGACCTACCATGACTGAAGTTGTTCAAGTTCTATCAAATATTGCTCCTGACAAATCAAGAAGGGCTAACAACATTTCTGCAAATATTTTTCAGGGAGGAGGGCAACCAGTGTGTAGCTTAGAAAGTGAAACACACATTGTCCGGGTCAACTCGAATCCTTCATCAGTGAAACAACTCCATACAGAAGTGAGTCCCATTGATGACATGAAGCTAAGGCCAGCTGCTCCATCCCACAAATGGCCCGATCGCCTATCACTTCCATTGGATATCGATCGTTCTCTTTGCGCTGGCAACAACTGTAATCAAGATATTGTTTCTTCCGAGTATATGGAACGACTCGTACTCTTGACTTCAAAGGACAGAAATTTCCGAGCTGCGGATGATGAATGTGAAACAGTGGACCTAACGGAGCCCCGGTACGAGTCATTTTCCATGTTGAACGTCACATCTTCCAAGTAA 1947 42.48 MKHRVAATSIFFISFVLVQQAFGDRISNTSIPGKWSCKCFSSFQENQSLVLGANCSTSCSCTPDAGGIGLWTCICAADGFPKVAADDRDPNCFTSCNCSSGLLPDLPSSKKHISSNVVVIILLLCVITTTLAFLASVVFYLSRRDKCQIRPPMFLLDRQMSCNSLTNLISHNSSSIPDSNTLLGSPVNNIKGCFYMNSCLNGTRTRSMCGIIIQFSYPELESATNKFSTSNLVGLGGSSFVYRGELKDGRTVAVKRLNIQGGPDVDYLFSTEIQLLSRLHHCHVVPLLGYCLESRGKHTERLLVYEYMPKGNLRDRLDMTSGEKMDWGTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDLPSCSSSPARMQGTFGYFAPEYAIIGRASLKSDVFSFGVVLLELITGQHPIHKSASKGEESLVIWAAPRLQNSRRVITELPDPHLNGMFPEEEIQIMAYLAKECLLLDPDDRPTMTEVVQVLSNIAPDKSRRANNISANIFQGGGQPVCSLESETHIVRVNSNPSSVKQLHTEVSPIDDMKLRPAAPSHKWPDRLSLPLDIDRSLCAGNNCNQDIVSSEYMERLVLLTSKDRNFRAADDECETVDLTEPRYESFSMLNVTSSK 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54393427 54397705 - evm.model.ptg000010l.315 HCH2g1189 540414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1189 648 FunFam receptor-like serine/threonine-protein kinase NCRK 202 307 - -
HCH2g1189 648 CDD STKc_IRAK 233 510 - -
HCH2g1189 648 PANTHER OS01G0750732 PROTEIN 101 524 IPR050885 -
HCH2g1189 648 ProSiteProfiles Protein kinase domain profile. 227 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1189 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g1189 648 SMART serkin_6 227 507 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1189 648 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524(InterPro)
HCH2g1189 648 Pfam Protein kinase domain 229 505 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1189 648 Gene3D Phosphorylase Kinase; domain 1 201 307 - -
HCH2g1189 648 Gene3D Transferase(Phosphotransferase) domain 1 308 527 - -
HCH2g1189 648 FunFam receptor-like serine/threonine-protein kinase NCRK 308 519 - -
HCH2g1189 648 SUPERFAMILY Protein kinase-like (PK-like) 206 507 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1189 HCH-Chr2:54393427 HCH13g0628 HCH-Chr13:4892828 3.60E-65 dispersed
HCH2g1189 HCH-Chr2:54393427 HCH2g1193 HCH-Chr2:54424763 6.90E-20 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81349 PF00069 Pkinase 1.10E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1189 - - - 0.0