Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1191 ATGGAAGCAAGCCAAGAGAATTGCAATGGCCACGTTGTGATGAATAAAAACCAAGACCCTCTGTATTGGTCGGCGGCGGCGGAGGGTCTGAAAGGTAGTCATCTTGAGGAGGTGAAACGTATGGTGGAGGAGTACCGGAAGCCGGTGGTGAGACTGGGTGGTGAGAGCTTGACGATAGGACAGGTGGCGGCGGTGGCGATGCACGACGGAGGAGTGAGAGTGGAGCTTAACGAGTCGGCGAGGAGCGGCGTGAAAGCGAGTAGTGATTGGGTGATGGAGAGTATGAATAAGGGGACGGATAGTTATGGAGTTACGACTGGTTTTGGTGCAACCTCTCATAGAAGGACCAATCAAGGAGCTGCCTTACAGAAGGAGCTTATTAGATTCTTGAATGCCGGAATATTTGGTAATGGAACAGAAACCAACCATACGTTGCCACACACGGCTACAAGAGCCGCAATGTTGGTTAGAATCAACACTCTTCTCCAAGGTTACTCGGGCATTAGATTCGAGATCTTAGAAACCATCACTAAGTTACTAAACAACAACATAACTCCTTGCTTACCTTTGCGTGGCACCATCACTGCTTCCGGTGATTTAGTCCCTTTCTCGTACATTGCCGGTTTCTTGACTGGTCGGTCTAATGCCAAGGCCGTAGGCCCGACCGGGGAGTTGCTCGATGCCGTTGCAGCCTTCCGACTTGCCGGCATTCAAAGCGGTTTCTTTGAGCTGCAGCCTAAGGAGGGTCTTGCACTTGTCAATGGGACAGGAGTTGGTTCTGGCTTAGCTTCCATTGTTCTTTTTGAAACCAATGTATTGACACTCTTATCTGAAGTCCTTTCTGCAATATTTGCTGAAGTTATGCAAGGAAAGCCTGAGTTTACTGATCATTTGACGCATAAATTAAAGCATCATCCTGGTCAGATTGAAGCTGCGGCTATTATGGAACATGTTTTAGATGGGAGTGCTTTCGTTAAAGAGGCTAAGAAGTTGCATGAGATGGACCCGTTGCAAAAGCCGAAGCAAGATCGATATGCGCTTCGAACTTCACCTCAATGGTTAGGCCCCCAGATTGAAGTCATTCGAAGCTCTACTAAATCTATTGAAAGAGAGATAAACTCAGTGAATGATAATCCATTGATTGATGTTTCGAGGAACAAAGCCTTGCATGGAGGCAATTTCCAAGGAACTCCAATTGGAGTGTCAATGGACAACACGAGACTAGCCATAGCTTCAATTGGGAAACTCATGTTTGCTCAGTTCTCTGAGCTGGTGAATGATTTTTACAACAATGGATTGCCTTCAAATCTTTCAGCAGGAAGTAATCCAAGCTTGGACTATGGTTTTAAAGGGGCTGAAATAGCCATGGCTTCCTATTGCTCAGAGCTTCAATTCTTAGCGAATCCGGTCACCAATCATGTTCAAAGCGCCGAGCAACACAACCAAGATGTGAACTCATTGGGACTAATCTCTTCAAGGAAGACAGCAGAAGCAGTAGACATCTTGAAGCTAATGAGCACAACCTTCCTAGTTGCTCTTTGCCAAGCCATAGACTTGAGACACATGGAAGAGAATCTGAAGATAACTGTGAAGAATACAGTGAGTCAAGTAGCCAAGAAGGTTTTAACCATTGGAGTAAACGGAGAGCTTCATCCTTCAAGATTCTGTGAGAAAGATTTGCTCAAAGTCATTGATCGTGAACAAGTTTTCGCCTACATTGACGATCCGTGCAGCATAACATATCCATTGATGCAGAAGCTCAGGCAAGTGCTTGTTGAGCATGCATTGAATAACAATGAAGATCTGAAGAATCCAAACTCTTCCATTTTTCTCAAGATTGGAGCTTTTGAGGAGGAATTAAAGACCCTTTTGCCTAAGGAGGTAGAAAGTGGAAGACATGGCTTGGGAATTGGAAAACCGTCAATTCCTAACAAGATAAAGGATTGTAGATCATATCCATTGTATAGATTTGTTAGAGAAGAGCTGGGAACTGCTATTTTGACAGGAGAGAAAGTTAGATCTCCTGGAGAAGAATTTGACAAAGTGTTCTCAGCAATTTGTGAGGGAAAGATCATTGATCCTCTGCTTGAATGTCTTGAGCATTGGAATGGAATTCCTCTTCCAATATGTTCAAAGAACTGA 2142 44.54 MEASQENCNGHVVMNKNQDPLYWSAAAEGLKGSHLEEVKRMVEEYRKPVVRLGGESLTIGQVAAVAMHDGGVRVELNESARSGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGAALQKELIRFLNAGIFGNGTETNHTLPHTATRAAMLVRINTLLQGYSGIRFEILETITKLLNNNITPCLPLRGTITASGDLVPFSYIAGFLTGRSNAKAVGPTGELLDAVAAFRLAGIQSGFFELQPKEGLALVNGTGVGSGLASIVLFETNVLTLLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHVLDGSAFVKEAKKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSAGSNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTFLVALCQAIDLRHMEENLKITVKNTVSQVAKKVLTIGVNGELHPSRFCEKDLLKVIDREQVFAYIDDPCSITYPLMQKLRQVLVEHALNNNEDLKNPNSSIFLKIGAFEEELKTLLPKEVESGRHGLGIGKPSIPNKIKDCRSYPLYRFVREELGTAILTGEKVRSPGEEFDKVFSAICEGKIIDPLLECLEHWNGIPLPICSKN 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54417395 54420322 + evm.model.ptg000010l.313 HCH2g1191 540416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1191 713 PANTHER HISTIDINE AMMONIA-LYASE 16 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
HCH2g1191 713 Gene3D - 523 644 IPR023144 -
HCH2g1191 713 FunFam Phenylalanine ammonia-lyase 523 644 - -
HCH2g1191 713 Gene3D - 10 256 IPR024083 -
HCH2g1191 713 FunFam Phenylalanine ammonia-lyase 10 256 - -
HCH2g1191 713 Pfam Aromatic amino acid lyase 57 531 IPR001106 -
HCH2g1191 713 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824(InterPro)
HCH2g1191 713 FunFam Phenylalanine ammonia-lyase 257 558 - -
HCH2g1191 713 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
HCH2g1191 713 Gene3D Fumarase/aspartase (Central domain) 258 704 - -
HCH2g1191 713 CDD PAL-HAL 55 520 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1191 HCH-Chr2:54417395 HCH9g0579 HCH-Chr9:3861421 0.00E+00 dispersed
HCH2g1191 HCH-Chr2:54417395 HCH9g0578 HCH-Chr9:3815159 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1191 K10775 - csv:101218156 1274.61