Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1211 ATGCGTTCTCTTCGTTCATGTTACTCTCTAAATCCCATCACACTCCCTCATCTCCATTTCAAAAAACTCATCTCCTTTAAACCATCTCCTTGCAATCCCATTGTCTTCACTCCCATTTCCGCCATGTCGTCCCGCCCTTCCGCTTTCGACGCTCTCATGTCCGGTGCCCGCGCTGCCGCCGCCAAGAAAAAACCTTCCACTTCCACTCCCACTTCAGCAACGACAACTTCTTCTCCCAAGAAACGTAAAGCCTCTGACTCTGATTCTTTAAACCCTAGCCCTTCCCCGACTATCGATTCGTCGACAACGACGCTGCCGCCACCGCATGTGCCTGTTGAATTGCCAACCGATAAGGATGGGGTGGCGGAGAAGAAAACGTGTGTGACGAGTGTTCAAGAGAGAAGTGGGAAATTGAAGGGTAGTATTGTGGAGTTGAAAAAGAAGGCGAAAGATTTCGACTTGAAGAAGGTTGCGTGTTGGAATGAGGGCGAAAGGGTGCCGTTTTTGTTTCTTTGTTTGGGATTCGATATGATTTCGGAGGAGTCTAGTAGGATTGCTATTACTGATATAGTGTGTAATATGTTGAGGACGGTTATGCATACTACACCTGATGATTTGGTTGCAAATGTGTATCTTTTAGCCAATAAGATTGCACCGGCCCATGAAGGACTGGAGTTGGGGATTGGTGATGCTTCTATTATCAAAGCTCTTTCTGAGGCTTTTGGTAGAACAGAGGCACAGGTCAAGAAACAATATAAGGAATTAGGAGATTTAGGTCTTGTTGCTAAAGCAAGCCGTTCATCACAATCCATGATGCGAAAGCCTGATGCTCTGACCATTACTAAAGTGTTTGACGCATTTCGGCTGATTGCGAAGGAATCTGGCAAGGATAGTCAAGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCCTTGTATCTGATTAGATTGCTACAGACAAAATTGCGAATTGGACTGGCTGAGCAGACTCTTTTAGCTGCGTTGGGGCAAGCTGCTGTGTATGCTGAGAAACACTCTACACCACCTGCACACATTCAATCTCCTCTAGAAGAGGCTGCCAAGATTGTCAAACAGGTGTATTCAATACTCCCAGTTTATGAAAAACTTGTCCCTGCACTTCTTAGTGGCGGTGTGTGGAATCTTTCAAAGACGTGTAACTTTACACCGGGTATTCCAATTGGACCCATGCTGGCAAAACCAACCAAGGGTGTGTCTGAGATATTAAATAAATTTCAGGATTTGGAATTTACCTGTGAATACAAATATGATGGAGAACGTGCCCAGATACATTATATGGAAAATGGTTCAGTTGAGATATACAGTCGAAATGCCGAACGAAACACCGGAAAGTTTCCTGATGTTGTGATTGCAGTATCAAGGGTGAAGAAACCATCCGTAAGATCGTTTATTTTGGATTGTGAACTTGTTGCTTATGACCGTGCAAAACAGAAAATTCTGCCATTCCAGATCCTGAGTACCCGGGCTCGCAAGAATGTGGTTGTGAGTGATATTAAGGTTGAAGTTTGTGTATTTGCTTTTGATTTATTGTATCTTGATGGTCAACCAGTTATTCAGCGAGAACTTAATGCTCGTCGAGAGCTTCTCTACGACTCTTTTATGGAAGAACCTGGAATTTTTCAGTTTGCTACAGCAATAATTACCAATGACCTCGAGGAAATACAAAAATTTCTTGATGCATCAGTTGATAAAAGTTGTGAAGGTTTAATTATCAAAACATTGAATAGAGATTCTACGTATGAGCCTTCCAAGAGGTCAAATAACTGGTTAAAACTGAAGAAGGATTACATAGACAATATAGGGGATTCACTTGATTTGGTACCTATTGCTGCCTTCCATGGACGTGGGAAGCGTACAGGTGTCTATGGTGCATTCCTCCTTGCTTGTTATGACAATGGTAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGTTTTTCTGAAGCAATGCTTGAAGAACGTTCTGCTAGTCTTCGTTCGAAAGTCATTCCTGAACCAAAGCGATATTATCGATTTGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCTGACTTGACTATTAGTCCAGTTCATCGTGCAGGAGTTGGCATAGTGGATCCAGATAAGGGCATTTCTCTTCGATTTCCACGTCTTGTTCGTGTTAGGAAAGATAAAAACCCAGAGGAAGCCTCGTCATCGGAGCAGGTTGCCGAAATGTACAATGCCCAGAAACACAATCACCAAAAGAATGAAAATGACAATGAAGATGACTGA 2346 42.84 MRSLRSCYSLNPITLPHLHFKKLISFKPSPCNPIVFTPISAMSSRPSAFDALMSGARAAAAKKKPSTSTPTSATTTSSPKKRKASDSDSLNPSPSPTIDSSTTTLPPPHVPVELPTDKDGVAEKKTCVTSVQERSGKLKGSIVELKKKAKDFDLKKVACWNEGERVPFLFLCLGFDMISEESSRIAITDIVCNMLRTVMHTTPDDLVANVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDAFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPAHIQSPLEEAAKIVKQVYSILPVYEKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQDLEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVIAVSRVKKPSVRSFILDCELVAYDRAKQKILPFQILSTRARKNVVVSDIKVEVCVFAFDLLYLDGQPVIQRELNARRELLYDSFMEEPGIFQFATAIITNDLEEIQKFLDASVDKSCEGLIIKTLNRDSTYEPSKRSNNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNGNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKRYYRFGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDPDKGISLRFPRLVRVRKDKNPEEASSSEQVAEMYNAQKHNHQKNENDNEDD 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54549610 54554718 - evm.model.ptg000010l.293 HCH2g1211 540436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1211 781 MobiDBLite consensus disorder prediction 88 107 - -
HCH2g1211 781 Gene3D - 618 780 IPR012340 -
HCH2g1211 781 CDD OBF_DNA_ligase_I 621 766 - -
HCH2g1211 781 ProSitePatterns ATP-dependent DNA ligase signature 2. 587 613 IPR016059 GO:0003909(InterPro)
HCH2g1211 781 FunFam DNA ligase 144 411 - -
HCH2g1211 781 FunFam DNA ligase 409 615 - -
HCH2g1211 781 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 150 400 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
HCH2g1211 781 Gene3D DNA ligase/mRNA capping enzyme 438 563 - -
HCH2g1211 781 SUPERFAMILY Nucleic acid-binding proteins 621 767 IPR012340 -
HCH2g1211 781 MobiDBLite consensus disorder prediction 64 80 - -
HCH2g1211 781 NCBIfam ATP-dependent DNA ligase 225 764 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
HCH2g1211 781 Pfam DNA ligase N terminus 167 342 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
HCH2g1211 781 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 433 441 IPR016059 GO:0003909(InterPro)
HCH2g1211 781 Gene3D - 419 617 - -
HCH2g1211 781 CDD Adenylation_DNA_ligase_I_Euk 398 616 - -
HCH2g1211 781 MobiDBLite consensus disorder prediction 747 781 - -
HCH2g1211 781 MobiDBLite consensus disorder prediction 60 129 - -
HCH2g1211 781 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 63 778 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
HCH2g1211 781 FunFam DNA ligase 618 777 - -
HCH2g1211 781 Pfam ATP dependent DNA ligase domain 409 613 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
HCH2g1211 781 Pfam ATP dependent DNA ligase C terminal region 638 749 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
HCH2g1211 781 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 401 619 - -
HCH2g1211 781 Gene3D - 143 411 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
HCH2g1211 781 ProSiteProfiles ATP-dependent DNA ligase family profile. 515 651 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1211 HCH-Chr2:54549610 HCH9g0388 HCH-Chr9:2461543 3.00E-135 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1211 K10747 - csv:101213447 1262.28