Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH2g1214 | ATGGACCAAAATGGGAACTCCTTAATGAACATCCATGACTACGAGCTCCAAGATTTCATCCATGGTGACAATTTTGATCAATATGTCAATCTTATTCGTGGAGAATGTGAAAATCCAATTTTCAACTTTGATCTTGATCTCATGAATGGTTGTTTGGCCGATGATCGTTTTGGTCCAAGTGGTGAATACATATTAGATTCTAATATCATCAACAATTCTGATCCAAATTCTTCTTTATTTAGTACATTGGAGAGTTTCAACAGTGACATGAAAGAAGTTGAAGATGAAGATGAAGATGAAGATGAAACTTCCATTGAAAATTCTTCGGTTACAACAATGGCAACAAAGAAGTCAAAGGTTGATAGATCAAGAACTTTGGTTTCTGAGAGAAGGAGGAGAGGAAGGATGAAGGAAAAGCTTTATTCATTACGATCATTAGTTCCAAATATTACAAAGATGGATAAAGCTTCCATTGTTGGAGATGCAGTGTTGTATGTGAAAGAGCTTCAAATGCAGGCCAAGAAACTCAAAACTGAGATATCAGTTCTTGAATCATCCATTAATGGGACAGAAACATATCATGGCTCCATTGAAAACCAGAAGAAGATTCATGTTTCACGCTCCAACCAATTGCTTCCCAAGAAAATAGTTCAGATGGATGTTTTTCAAGTGGAGGAAAGAGGTTTTTATTTGAGATTGGTTTGCAAAATGGCACAAGGAGTAACCATGTCACTTTACAAGGTTCTTGAATCCCTTACCAGCTTCAATATTCAAACCTCTAACTTGGCTTCTGCTTCTGATAGATTTGTTCTCACTGCTACAATCAATGTGAGAGATTGTGAGCAGGATATGAACTTGCCAAATCTGAAGCTTTGGTTAACTGGGGCACTTCTTAACCATGGATTTGAATTTTAA | 915 | 36.61 | MDQNGNSLMNIHDYELQDFIHGDNFDQYVNLIRGECENPIFNFDLDLMNGCLADDRFGPSGEYILDSNIINNSDPNSSLFSTLESFNSDMKEVEDEDEDEDETSIENSSVTTMATKKSKVDRSRTLVSERRRRGRMKEKLYSLRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKTEISVLESSINGTETYHGSIENQKKIHVSRSNQLLPKKIVQMDVFQVEERGFYLRLVCKMAQGVTMSLYKVLESLTSFNIQTSNLASASDRFVLTATINVRDCEQDMNLPNLKLWLTGALLNHGFEF | 304 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 54572359 | 54573874 | + | evm.model.ptg000010l.290 | HCH2g1214 | 540439 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH2g1214 | 304 | Coils | Coil | 166 | 186 | - | - | |
| HCH2g1214 | 304 | SMART | finulus | 126 | 175 | IPR011598 | GO:0046983(InterPro) | |
| HCH2g1214 | 304 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 120 | 169 | IPR011598 | GO:0046983(InterPro) | |
| HCH2g1214 | 304 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 116 | 186 | - | - | |
| HCH2g1214 | 304 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 122 | 197 | IPR036638 | GO:0046983(InterPro) | |
| HCH2g1214 | 304 | Gene3D | - | 111 | 186 | IPR036638 | GO:0046983(InterPro) | |
| HCH2g1214 | 304 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 87 | 302 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
| HCH2g1214 | 304 | Pfam | Helix-loop-helix DNA-binding domain | 126 | 170 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g1214 | HCH-Chr2:54572359 | HCH8g1061 | HCH-Chr8:46542047 | 3.40E-18 | dispersed | |
| HCH2g1214 | HCH-Chr2:54572359 | HCH10g0215 | HCH-Chr10:1782692 | 1.10E-19 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33241 | PF00010 | HLH | 3.70E-09 | No_clan | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH2g1214 | K26214 | - | csv:101213681 | 404.06 |