Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1221 ATGGGTCAGATTCAGTACTCTGAGAAATACTTTGACGACACTTACGAGTATCGCCATGTCGTCCTCCCTCCCGAAGTTGCTAAACTCCTTCCTAAGAATCGCCTCCTCTCTGAAAATGAGTGGCGTGGGATTGGGGTTCAGCAGAGTCGCGGGTGGGTGCACTATGCTATCCATCGTCCCGAGCCGCACATCATGCTATTCAGGAGGCCTCTGAACTATCAACAGCAGCAGGAGAACCTTACTCAGCAAAACGTGCTTGCTAAATGA 267 50.56 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRGIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLTQQNVLAK 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54602561 54603360 - evm.model.ptg000010l.283 HCH2g1221 540446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1221 88 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
HCH2g1221 88 Gene3D - 1 83 IPR036858 GO:0016538(InterPro)
HCH2g1221 88 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538(InterPro)
HCH2g1221 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 83 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
HCH2g1221 88 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
HCH2g1221 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
HCH2g1221 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
HCH2g1221 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
HCH2g1221 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
HCH2g1221 88 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
HCH2g1221 88 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1221 HCH-Chr2:54602561 HCH3g1185 HCH-Chr3:42816864 4.90E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1221 K02219 - rcu:8275256 175.252