Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1250 ATGAGTGCGTTGCACTTGCAATTGCCGCTTAGAATCGACGCCAATCTCGCATTTTGCCCATTCTGCCTTCCTTCTCTGAAACCCTCGTTATTAGTTCTTTCTCTACCAATCAAATTCTCACATCTCCGGAAAAAGCTCAAAACTTCACCAAATTCCCACAAAACCCATTTCTCATCTTTTACAATTGCTTCCATGGCCAATCCCGCAAGCTCAGAGACAGAGGCAAAGCCGTTTTCAGTCCTTTTTGTGTGCTTAGGCAATATCTGCAGAAGCCCAGCTGCTGAAGGAGTATTCAGAGACTTGGTCAATAAAAAGGGTCTCAATTCCAATTTCAATATTGATTCTGCTGGCACCATTGGTTTCCATGAGGGTGATGAAGCTGATCCAAGAATGAGGGCTACCTCTAAACGGCGTGGGATAGAGATAACGTCGTTATCGAGGCCGATTCGGCCTTCTGATTTTAAAGATTTTGATCTCATTCTTGCCATGGATAAGAAAAACAGAGAGGATATTTTGGGGGCTTTCAATCGGTGGAAACACAGGGAGACTCTTCCTCCTGATTCACATAAAAAGGTCAAATTAATGTGCTCGTATTGCAAAAAACATGATGAAACAGAAGTTCCGGATCCTTACTACGGTGGGCAACAAGGGTTTGAGAAGGTTTTAGACTTGCTTGAAGATGCCTGTGAATCTCTACTGGAAAGCATCTTGGCAGAGAACAAACACATTTCAGGTTCATGA 741 43.18 MSALHLQLPLRIDANLAFCPFCLPSLKPSLLVLSLPIKFSHLRKKLKTSPNSHKTHFSSFTIASMANPASSETEAKPFSVLFVCLGNICRSPAAEGVFRDLVNKKGLNSNFNIDSAGTIGFHEGDEADPRMRATSKRRGIEITSLSRPIRPSDFKDFDLILAMDKKNREDILGAFNRWKHRETLPPDSHKKVKLMCSYCKKHDETEVPDPYYGGQQGFEKVLDLLEDACESLLESILAENKHISGS 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54819068 54820811 - evm.model.ptg000010l.254 HCH2g1250 540475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1250 246 FunFam Low molecular weight protein-tyrosine-phosphatase 77 241 - -
HCH2g1250 246 Pfam Low molecular weight phosphotyrosine protein phosphatase 80 233 IPR023485 -
HCH2g1250 246 Gene3D - 61 241 - -
HCH2g1250 246 SMART LMWPc_2 78 235 IPR023485 -
HCH2g1250 246 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 58 242 IPR052995 -
HCH2g1250 246 PRINTS LMW phosphotyrosine protein phosphatase signature 123 139 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH2g1250 246 PRINTS LMW phosphotyrosine protein phosphatase signature 207 222 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH2g1250 246 PRINTS LMW phosphotyrosine protein phosphatase signature 80 97 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH2g1250 246 CDD LMWPTP 79 234 - -
HCH2g1250 246 SUPERFAMILY Phosphotyrosine protein phosphatases I 76 236 IPR036196 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1250 K25307 - - csv:101207515 352.443
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011691 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 0 2 1 1 30