Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g1251 | ATGACTACAATAGCCGGTACATCTGAAATTGTTGAATCAACAGAAGAATTTGATTCAGGGTTAGGAATGAATGAGAAAGCTGGGACAAGTTACATGGTAGACGGAGGAGAAAAGTTTTCCATAGAGGATGACATTAATCGTCTGTTCCAGGCAATTGATATCAGAACATTATGTAAGAGGTCAGGCCGGCAACGCGAAGTTGGTAGAGATGCTTTGCGGAGAAATGCAATGAAAAGACCAGTTAGAGTAGGTTCATCTCACATATCAGGGATCGGAATTTCAGAACCTGCAAGTTTAAAGCAGGCTTTGAGAGGCTTATGCATTTCTCAGGCAGCAGAAATGGCCGCTACAAAGAGGTTAATGAGGTCTGTAGGTGCACCTAGAATCTCTGAAGCAGGAACTATCAAAAGGTTGTATAGGGCTGTGGTGGTTGAGGCCAATGGATCTGGTGTGCCTGTAAATGAAAGTAAAGCAAATTTGGTAGAATTTTCCATCGTGTCAGAAAAAGTTGTGTCAAATTTACGAGATGAGATGCCTGAATCGTTGTATAAAACTGAGGCTGATCTATCAAGCCGAGGAGCTCAGTCTTCTTCTCTCGTAGACGACACAGTATTACAAGAGGCTTCTGTGGAAAGATTAATGGTAAAGGATCCGACAGAAGTGACAAGTATAAAGCCGCTTGAAGTGGTGGAAAAACTTGAATCTTCTTCCTTGACTTGTTCTGGTGAAGAAGCTCCGGCTATGAATGGCATGTCTATTTCCTTGACTGAAGATGTGATGAAAAAATCTATAGCTGAAAAAGAGGAGAAAGTTACAGTACGTTGTCTTTCTTCTCTGTCGAGCTCTGGAATTGATGTTAGGCCAAGCAAATCTGCATTAAAAAATTCACGTTTTATCAAGCCTATTTTCAGGACGAAGAATTTTGGCAAGAAGAAAGCAAAACTTGAATTAAATTCCTCCTCTGATATGCCTGACACGTGCACAGGAACTGTTAACACTGATTTAGGTTCCACAACAGAAAAATCTGAGAACCAGGTCCCCAACAATGCTCAGCATCATGAGAGTAAAGAAGAAGAGAAAGCCTCTTCATTCTCTAGTAGCACAACTTTAGGCATTGAAGTAAGTACAAGTGTACTAAACACAGATTCTAGCAGAAAGGGATGTTCTCTCAACTCTTGTAACAGAAACAGGCAAATTATCATGCGATCTGATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAAAGCTCAAAAAGTAGCATTGGTGACTGTAGCAGTAGCCCAAGCATCAGTGGGGAAAGCATTCTTAGTGGATCAAGTCGTAGTGGATTTAGGCCTCACATGTCAAAGGACTTGAAATGGGAAGCCATCCACCGTATTCAAAATCAACATAAAAGCCTAGGTCTTAGAAACTTCAAGCTGTTAAAAAGACTTGGTCTTGGAGACATTGGGACCGTGTATCTTTCTGAGCTAATTGATACAAACTGTCTATTTGCTATTAAAGTGATGGATAAGGAGTTCTTGGCAAGCAGGAAGAAAATGCTTCGGGCCCAAACTGAGAGAGAGATACTGCAAATGCTTGATCATCCTTTTCTCCCTACATTATATGCTCATTTTGAGACGGATAAGCTCTCATGCTTGGTCATTGACTATTGTCCAGGCGGAGATCTCCATGTGCTGCGGCAGAAGCAACCATGCAAGAGTTTTTCTGAGCATGCAGTCAGGTTTTACGTTGCTGAAGTACTTCTTTCCCTCGAGTACTTACACATGCTAGGAGTTGTTTATCGAGACTTGAAACCTGAAAATGTTCTGGTCCGAGAAGATGGGCATATTATGCTCACAGATTTTGATTTGTCCCTCAGATGTGCTGTTAATCCAATGCTGCTTCAGTCATCGTCTCCAGTTGTGGAATCTACAAAAAGGACGTTGAATCCTTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCACCCATCCTGGCAAGTCTCATGCTTCACTCCTAAACTTCAATCTGCTCCATCGAAATCTCGGAGAATGAAATCAGATAATCAGGCTAGTCTATTGCCACAGCTTGTAGTGGAGCCAACCGGTGCTCGGTCCAATTCATTTGTAGGAACCCACGAGTACCTTGCTCCTGAGATCATCAGGGCCGATGGCCATGGGAGTGCCGTTGATTGGTGGACTTACGGGATTTTCCTGTTCGAGCTACTGTATAGCAAGACACCCTTCAAGGGTTCAGGAAATGAGGACACCTTAGCGAACATAGTGTCACAAACTCTCAGGTTTCCAGACAGCCCCATCGTTAGTTTCCATGCAAGAGATCTGATTAGATGTCTGCTGGCAAAGGAGCCTGAAAACCGGTTAGGCTCCACAAAAGGGGCTATAGAGATTAAACAGCATCCATTTTTCGAAGGCCTCAACTGGGCTCTGATACGTTGTTCAGTTCCACCAGAGCTACCCAAGTTTTTCGAGGGTGGAACGGGTGCAACGCTCACAGAACCCGCTAAGGAGAGCACAAAGCGTAAAGAACTTGTGAATATTATGGAGACAGATGCAACCTTTGACCTGTTTTAG | 2583 | 43.17 | MTTIAGTSEIVESTEEFDSGLGMNEKAGTSYMVDGGEKFSIEDDINRLFQAIDIRTLCKRSGRQREVGRDALRRNAMKRPVRVGSSHISGIGISEPASLKQALRGLCISQAAEMAATKRLMRSVGAPRISEAGTIKRLYRAVVVEANGSGVPVNESKANLVEFSIVSEKVVSNLRDEMPESLYKTEADLSSRGAQSSSLVDDTVLQEASVERLMVKDPTEVTSIKPLEVVEKLESSSLTCSGEEAPAMNGMSISLTEDVMKKSIAEKEEKVTVRCLSSLSSSGIDVRPSKSALKNSRFIKPIFRTKNFGKKKAKLELNSSSDMPDTCTGTVNTDLGSTTEKSENQVPNNAQHHESKEEEKASSFSSSTTLGIEVSTSVLNTDSSRKGCSLNSCNRNRQIIMRSDERSRSREKGMFSQSSKSSIGDCSSSPSISGESILSGSSRSGFRPHMSKDLKWEAIHRIQNQHKSLGLRNFKLLKRLGLGDIGTVYLSELIDTNCLFAIKVMDKEFLASRKKMLRAQTEREILQMLDHPFLPTLYAHFETDKLSCLVIDYCPGGDLHVLRQKQPCKSFSEHAVRFYVAEVLLSLEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPMLLQSSSPVVESTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKLQSAPSKSRRMKSDNQASLLPQLVVEPTGARSNSFVGTHEYLAPEIIRADGHGSAVDWWTYGIFLFELLYSKTPFKGSGNEDTLANIVSQTLRFPDSPIVSFHARDLIRCLLAKEPENRLGSTKGAIEIKQHPFFEGLNWALIRCSVPPELPKFFEGGTGATLTEPAKESTKRKELVNIMETDATFDLF | 860 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 54821396 | 54824450 | - | evm.model.ptg000010l.253 | HCH2g1251 | 540476 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g1251 | 860 | PANTHER | FLIPPASE KINASE 1-RELATED | 343 | 832 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
HCH2g1251 | 860 | MobiDBLite | consensus disorder prediction | 319 | 349 | - | - | |
HCH2g1251 | 860 | Pfam | Protein kinase domain | 475 | 623 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1251 | 860 | Pfam | Protein kinase domain | 703 | 806 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1251 | 860 | CDD | STKc_phototropin_like | 474 | 824 | - | - | |
HCH2g1251 | 860 | MobiDBLite | consensus disorder prediction | 316 | 368 | - | - | |
HCH2g1251 | 860 | FunFam | Serine/threonine-protein kinase D6PK-like | 472 | 557 | - | - | |
HCH2g1251 | 860 | ProSiteProfiles | Protein kinase domain profile. | 474 | 806 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1251 | 860 | Gene3D | Transferase(Phosphotransferase) domain 1 | 701 | 817 | - | - | |
HCH2g1251 | 860 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 595 | 607 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH2g1251 | 860 | MobiDBLite | consensus disorder prediction | 399 | 413 | - | - | |
HCH2g1251 | 860 | MobiDBLite | consensus disorder prediction | 414 | 446 | - | - | |
HCH2g1251 | 860 | SMART | serkin_6 | 474 | 806 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1251 | 860 | FunFam | serine/threonine-protein kinase D6PK-like | 701 | 824 | - | - | |
HCH2g1251 | 860 | Gene3D | Phosphorylase Kinase; domain 1 | 472 | 553 | - | - | |
HCH2g1251 | 860 | FunFam | serine/threonine-protein kinase D6PK-like | 558 | 625 | - | - | |
HCH2g1251 | 860 | SUPERFAMILY | Protein kinase-like (PK-like) | 449 | 825 | IPR011009 | - | |
HCH2g1251 | 860 | Gene3D | Transferase(Phosphotransferase) domain 1 | 554 | 622 | - | - | |
HCH2g1251 | 860 | MobiDBLite | consensus disorder prediction | 399 | 447 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g1251 | HCH-Chr2:54821396 | HCH3g1038 | HCH-Chr3:14475731 | 4.00E-149 | dispersed | |
HCH2g1251 | HCH-Chr2:54821396 | HCH2g1252 | HCH-Chr2:54832835 | 4.80E-110 | tandem | |
HCH2g1251 | HCH-Chr2:54821396 | HCH9g0508 | HCH-Chr9:3243154 | 1.40E-194 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81352 | PF00069 | Pkinase | 6.90E-35 | CL0016 | HCH | PK |
Pathway information
