Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1251 ATGACTACAATAGCCGGTACATCTGAAATTGTTGAATCAACAGAAGAATTTGATTCAGGGTTAGGAATGAATGAGAAAGCTGGGACAAGTTACATGGTAGACGGAGGAGAAAAGTTTTCCATAGAGGATGACATTAATCGTCTGTTCCAGGCAATTGATATCAGAACATTATGTAAGAGGTCAGGCCGGCAACGCGAAGTTGGTAGAGATGCTTTGCGGAGAAATGCAATGAAAAGACCAGTTAGAGTAGGTTCATCTCACATATCAGGGATCGGAATTTCAGAACCTGCAAGTTTAAAGCAGGCTTTGAGAGGCTTATGCATTTCTCAGGCAGCAGAAATGGCCGCTACAAAGAGGTTAATGAGGTCTGTAGGTGCACCTAGAATCTCTGAAGCAGGAACTATCAAAAGGTTGTATAGGGCTGTGGTGGTTGAGGCCAATGGATCTGGTGTGCCTGTAAATGAAAGTAAAGCAAATTTGGTAGAATTTTCCATCGTGTCAGAAAAAGTTGTGTCAAATTTACGAGATGAGATGCCTGAATCGTTGTATAAAACTGAGGCTGATCTATCAAGCCGAGGAGCTCAGTCTTCTTCTCTCGTAGACGACACAGTATTACAAGAGGCTTCTGTGGAAAGATTAATGGTAAAGGATCCGACAGAAGTGACAAGTATAAAGCCGCTTGAAGTGGTGGAAAAACTTGAATCTTCTTCCTTGACTTGTTCTGGTGAAGAAGCTCCGGCTATGAATGGCATGTCTATTTCCTTGACTGAAGATGTGATGAAAAAATCTATAGCTGAAAAAGAGGAGAAAGTTACAGTACGTTGTCTTTCTTCTCTGTCGAGCTCTGGAATTGATGTTAGGCCAAGCAAATCTGCATTAAAAAATTCACGTTTTATCAAGCCTATTTTCAGGACGAAGAATTTTGGCAAGAAGAAAGCAAAACTTGAATTAAATTCCTCCTCTGATATGCCTGACACGTGCACAGGAACTGTTAACACTGATTTAGGTTCCACAACAGAAAAATCTGAGAACCAGGTCCCCAACAATGCTCAGCATCATGAGAGTAAAGAAGAAGAGAAAGCCTCTTCATTCTCTAGTAGCACAACTTTAGGCATTGAAGTAAGTACAAGTGTACTAAACACAGATTCTAGCAGAAAGGGATGTTCTCTCAACTCTTGTAACAGAAACAGGCAAATTATCATGCGATCTGATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAAAGCTCAAAAAGTAGCATTGGTGACTGTAGCAGTAGCCCAAGCATCAGTGGGGAAAGCATTCTTAGTGGATCAAGTCGTAGTGGATTTAGGCCTCACATGTCAAAGGACTTGAAATGGGAAGCCATCCACCGTATTCAAAATCAACATAAAAGCCTAGGTCTTAGAAACTTCAAGCTGTTAAAAAGACTTGGTCTTGGAGACATTGGGACCGTGTATCTTTCTGAGCTAATTGATACAAACTGTCTATTTGCTATTAAAGTGATGGATAAGGAGTTCTTGGCAAGCAGGAAGAAAATGCTTCGGGCCCAAACTGAGAGAGAGATACTGCAAATGCTTGATCATCCTTTTCTCCCTACATTATATGCTCATTTTGAGACGGATAAGCTCTCATGCTTGGTCATTGACTATTGTCCAGGCGGAGATCTCCATGTGCTGCGGCAGAAGCAACCATGCAAGAGTTTTTCTGAGCATGCAGTCAGGTTTTACGTTGCTGAAGTACTTCTTTCCCTCGAGTACTTACACATGCTAGGAGTTGTTTATCGAGACTTGAAACCTGAAAATGTTCTGGTCCGAGAAGATGGGCATATTATGCTCACAGATTTTGATTTGTCCCTCAGATGTGCTGTTAATCCAATGCTGCTTCAGTCATCGTCTCCAGTTGTGGAATCTACAAAAAGGACGTTGAATCCTTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCACCCATCCTGGCAAGTCTCATGCTTCACTCCTAAACTTCAATCTGCTCCATCGAAATCTCGGAGAATGAAATCAGATAATCAGGCTAGTCTATTGCCACAGCTTGTAGTGGAGCCAACCGGTGCTCGGTCCAATTCATTTGTAGGAACCCACGAGTACCTTGCTCCTGAGATCATCAGGGCCGATGGCCATGGGAGTGCCGTTGATTGGTGGACTTACGGGATTTTCCTGTTCGAGCTACTGTATAGCAAGACACCCTTCAAGGGTTCAGGAAATGAGGACACCTTAGCGAACATAGTGTCACAAACTCTCAGGTTTCCAGACAGCCCCATCGTTAGTTTCCATGCAAGAGATCTGATTAGATGTCTGCTGGCAAAGGAGCCTGAAAACCGGTTAGGCTCCACAAAAGGGGCTATAGAGATTAAACAGCATCCATTTTTCGAAGGCCTCAACTGGGCTCTGATACGTTGTTCAGTTCCACCAGAGCTACCCAAGTTTTTCGAGGGTGGAACGGGTGCAACGCTCACAGAACCCGCTAAGGAGAGCACAAAGCGTAAAGAACTTGTGAATATTATGGAGACAGATGCAACCTTTGACCTGTTTTAG 2583 43.17 MTTIAGTSEIVESTEEFDSGLGMNEKAGTSYMVDGGEKFSIEDDINRLFQAIDIRTLCKRSGRQREVGRDALRRNAMKRPVRVGSSHISGIGISEPASLKQALRGLCISQAAEMAATKRLMRSVGAPRISEAGTIKRLYRAVVVEANGSGVPVNESKANLVEFSIVSEKVVSNLRDEMPESLYKTEADLSSRGAQSSSLVDDTVLQEASVERLMVKDPTEVTSIKPLEVVEKLESSSLTCSGEEAPAMNGMSISLTEDVMKKSIAEKEEKVTVRCLSSLSSSGIDVRPSKSALKNSRFIKPIFRTKNFGKKKAKLELNSSSDMPDTCTGTVNTDLGSTTEKSENQVPNNAQHHESKEEEKASSFSSSTTLGIEVSTSVLNTDSSRKGCSLNSCNRNRQIIMRSDERSRSREKGMFSQSSKSSIGDCSSSPSISGESILSGSSRSGFRPHMSKDLKWEAIHRIQNQHKSLGLRNFKLLKRLGLGDIGTVYLSELIDTNCLFAIKVMDKEFLASRKKMLRAQTEREILQMLDHPFLPTLYAHFETDKLSCLVIDYCPGGDLHVLRQKQPCKSFSEHAVRFYVAEVLLSLEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPMLLQSSSPVVESTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKLQSAPSKSRRMKSDNQASLLPQLVVEPTGARSNSFVGTHEYLAPEIIRADGHGSAVDWWTYGIFLFELLYSKTPFKGSGNEDTLANIVSQTLRFPDSPIVSFHARDLIRCLLAKEPENRLGSTKGAIEIKQHPFFEGLNWALIRCSVPPELPKFFEGGTGATLTEPAKESTKRKELVNIMETDATFDLF 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54821396 54824450 - evm.model.ptg000010l.253 HCH2g1251 540476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1251 860 PANTHER FLIPPASE KINASE 1-RELATED 343 832 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH2g1251 860 MobiDBLite consensus disorder prediction 319 349 - -
HCH2g1251 860 Pfam Protein kinase domain 475 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1251 860 Pfam Protein kinase domain 703 806 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1251 860 CDD STKc_phototropin_like 474 824 - -
HCH2g1251 860 MobiDBLite consensus disorder prediction 316 368 - -
HCH2g1251 860 FunFam Serine/threonine-protein kinase D6PK-like 472 557 - -
HCH2g1251 860 ProSiteProfiles Protein kinase domain profile. 474 806 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1251 860 Gene3D Transferase(Phosphotransferase) domain 1 701 817 - -
HCH2g1251 860 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g1251 860 MobiDBLite consensus disorder prediction 399 413 - -
HCH2g1251 860 MobiDBLite consensus disorder prediction 414 446 - -
HCH2g1251 860 SMART serkin_6 474 806 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1251 860 FunFam serine/threonine-protein kinase D6PK-like 701 824 - -
HCH2g1251 860 Gene3D Phosphorylase Kinase; domain 1 472 553 - -
HCH2g1251 860 FunFam serine/threonine-protein kinase D6PK-like 558 625 - -
HCH2g1251 860 SUPERFAMILY Protein kinase-like (PK-like) 449 825 IPR011009 -
HCH2g1251 860 Gene3D Transferase(Phosphotransferase) domain 1 554 622 - -
HCH2g1251 860 MobiDBLite consensus disorder prediction 399 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1251 HCH-Chr2:54821396 HCH3g1038 HCH-Chr3:14475731 4.00E-149 dispersed
HCH2g1251 HCH-Chr2:54821396 HCH2g1252 HCH-Chr2:54832835 4.80E-110 tandem
HCH2g1251 HCH-Chr2:54821396 HCH9g0508 HCH-Chr9:3243154 1.40E-194 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81352 PF00069 Pkinase 6.90E-35 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1251 - - - 0.0