Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1252 ATGGAGCCTTCTTCCGACGATATCGCAGACGACCTTCAGAGTCTAAGCTTCAACTCCACCAACACTAACCGAAGTACCAGTTCCGGCTCCGAGACCACTCTCACCGCTTCCTCCTCTTCTTTCTCTTCTCTCTTCAACAAACCTCACGCGCCGTCGTCTGACCCGTGTTGGGCCGGTATAAACCGGATCCGATCCGAATCTTGTACCCGACAACTCGCTTTCTCTGACCTTAAATTCTCGCACCGTCTTGGTTCCGGAGATATTGGGTCGGTTTACCTAGCAGGCTTGAAGTGCGGCGGCGGTGCGGCGGAGGGATGTGTTTTTGCGGCCAAGGTAATGGATAAGAAGGAGCTTGTGAGCAGGAGTAAAGAAGGGAGGGCGAGGACTGAGCGGGAAATATTGGAGTTGTTGGATCACCCATTCCTTCCGACACTTTATGCAAGTATTGATTCGCCGAGGTGGCTTTGTCTCTTGACGGAGTTTTGTCCCGGCGGTGACCTTCACGTCCTCCGTCAACGACAGCCTAACAAACGCTTCCACGAACTTGCCGTCAGGTTCTATGCGACAGAAGTAGTGGTTGCTATTGAATACCTTCACATGATGGGGATCGTATATCGTGATCTAAAGCCTGAAAATGTGCTGGTACGATCAGACGGCCACATCATGCTCACTGATTTTGATCTCTCCTTAAAGTGTGAGGATTCTACTTCGACCCCACAGGTTATTACTTCTAAAAATCCAACAAATAGCGCCGCCCCACAAAAAGACTACCACATTGATGCTCCTACTTTCACATCATCTTCCTGCATGCTTCCAAATTGTATAGTACCCGCCGTGTCATGTTTTCACCCGAAACGTAAGCGCAAGAACAAGTCAAGTCATCGCAATGGACCCGAGTTTGTCGCCGAGCCCATCGATGTCCGGTCGATGTCGTTCGTTGGGACACATGAGTACTTGGCGCCTGAGATTGTCTCTGGTGAGGGCCATGGAAGTGCGGTGGACTGGTGGACTCTTGGAGTGTTTGTGTTTGAGTTGTTTTACGGCGTGACACCCTTTAGGGGCACAGACAATGAGCTAACCTTAGCCAATATCGTGGCTAGAGCCCTTGAGTTCCCTAAAGAACCGGCGGTGCCAGCAGCAGCGAAGGACCTCATCTCACAGTTACTGATTAAAGATCCCACAAGGCGACTCGGATCGGTGATGGGGTCGTCGGCCATCAAGCATCATTCGTTTTTCCAAGGGGTTAATTGGGCATTGTTGAGATGTACATCCCCACCATTTATTCCCCCGCCATATAGAAAAGTTGTATCGGATGAAAGCTGCCCAGAGGCCCCAGTGGACTATTATTAG 1350 50.59 MEPSSDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSFSSLFNKPHAPSSDPCWAGINRIRSESCTRQLAFSDLKFSHRLGSGDIGSVYLAGLKCGGGAAEGCVFAAKVMDKKELVSRSKEGRARTEREILELLDHPFLPTLYASIDSPRWLCLLTEFCPGGDLHVLRQRQPNKRFHELAVRFYATEVVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTSTPQVITSKNPTNSAAPQKDYHIDAPTFTSSSCMLPNCIVPAVSCFHPKRKRKNKSSHRNGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGTDNELTLANIVARALEFPKEPAVPAAAKDLISQLLIKDPTRRLGSVMGSSAIKHHSFFQGVNWALLRCTSPPFIPPPYRKVVSDESCPEAPVDYY 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54832835 54836438 + evm.model.ptg000010l.252 HCH2g1252 540477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1252 449 FunFam serine/threonine-protein kinase D6PK-like 166 233 - -
HCH2g1252 449 SUPERFAMILY Protein kinase-like (PK-like) 61 440 IPR011009 -
HCH2g1252 449 Gene3D Phosphorylase Kinase; domain 1 76 165 - -
HCH2g1252 449 Gene3D Transferase(Phosphotransferase) domain 1 308 430 - -
HCH2g1252 449 Pfam Protein kinase domain 309 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1252 449 Pfam Protein kinase domain 79 243 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1252 449 ProSiteProfiles Protein kinase domain profile. 77 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1252 449 PANTHER FLIPPASE KINASE 1-RELATED 24 431 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH2g1252 449 MobiDBLite consensus disorder prediction 9 33 - -
HCH2g1252 449 MobiDBLite consensus disorder prediction 1 33 - -
HCH2g1252 449 FunFam serine/threonine-protein kinase D6PK-like 307 430 - -
HCH2g1252 449 CDD STKc_phototropin_like 75 431 - -
HCH2g1252 449 SMART serkin_6 77 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1252 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g1252 449 FunFam serine/threonine-protein kinase D6PKL2 76 165 - -
HCH2g1252 449 Gene3D Transferase(Phosphotransferase) domain 1 166 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1252 HCH-Chr2:54832835 HCH6g0968 HCH-Chr6:44503937 8.70E-111 dispersed
HCH2g1251 HCH-Chr2:54821396 HCH2g1252 HCH-Chr2:54832835 4.80E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81353 PF00069 Pkinase 3.80E-33 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1252 K08286 - csv:101207262 758.444