Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1255 ATGAGCGGCGAAAGCCGTCGGCGAGGCCGCACTGATTTCCGCAGCTCAAAGAAGCAGAGGCTAATTCGATCCGCTGAGGAAGAGATCGAATCAAAGCTCGGTTTCGATCTCTTTTCCGAAGGCGATAAGAGGCTTGGATGGTTACTTACTTTCGCTCCTTCTTCTCTGGAGGAACAGGATACCAAAAAGGTCTACAGCTGCATTGATCTTTATTTTGTTGCACAGGATGGAAGCGGTTTCAAATCGAAATATAAGTTCCGTCCTTATTTCTACGCAGCCACAAAGGATAAAATGGAAATTGATGTTGAGGCTTATCTGAGACGACGGTATGAAACTCAAATAGCTGATATTGAGATTTTAGAAAAAGAAGACCTCGATCTTAAGAATCATTTATCTGGCTTGCACAAGGCTTATTTAAAGCTATCTTTTGACACTGTCCAAGAATTGATGAATGTAAAGAGTGAGCTTTTGCGTGTTGTTGAAAGCAATTGGGCAAAATCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAGAAACCTCAAGATTTTTTAGAGTGTATTGTTGATCTTCGAGAATATGATGTTCCTTACCACGTTCGCTTTGCTATTGATCATGATTTGCGCTGTGGACAGTGGTACGATGTTAGTGTATCAAGCACTGATGTTGTGCTTGAGAAGAGAAAAGATCTTCTGCAGCGTGCTGAAGTTCACATTTGCGCTTTTGATATTGAGACCACAAAGCTTCCGTTGAAATTTCCAGATGCTGAATATGACTTGGTAATGATGATTTCCTATATGGTTGATGGACAAGGGTACCTGATTATCAACAGGGAGTGTGTTGGAGAAGATATTGAGAATTTGGAGTACACCCCTAAACCAGAATTTGAAGGGTTCTTCAAAGTGACTAATGTGAAAAATGAGGTGGAGCTTCTCAAACTGTGGTTTGCCCATATGCGAGAGGTAAAACCTGGTATTTATGTCACCTACAATGGTGACTATTTTGACTGGCCATTCCTTGAGAGCAGAGCGACCTATCATGGGCTTAAAATGAGTGATGAAGTAGGATTTCAATGTGACAAAAACCAGGGGGAATGTCGTTCAAGATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGACAGTTATCTACCTCAGGGTAGCCAGGGTTTGAAGGCTGTCACAAAAGCAAAATTGGGTTACGATCCTCTTGAAGTGAATCCTGAGGATATGGTACGCTTTGCGAAGGAAAAGCCTCAGATGATGGCTTCCTACTCTGTTTCAGATGCTGTTTCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATCATTCCAATGTCACCCGATGAGGTATTGCGCAAGGGAAGTGGGACACTTTGTGAAATGCTTCTAATGGTTGAGTCTTACAAGGCTAATGTTGTGTGCCCTAACAAACATCAATCAGATTCGGAGAAGTTCTATAATAACCGGCTTCTTGAAAGTGAGACATACATAGGTGGCCATGTGGAGTGCCTAGAAAGCGGTGTATTTAGATCTGACCTTCCTACCAGTTTTAGGCTTGATCCATCAGCTTATGATCAACTGATAAACAACCTGGATAGAGATCTGCAGTATGCCATACAAGTAGAAGGAAAGTTGGATTTGGAATCGGTGTCAAACTATAATGATGTGAAGAATGCTATCATGGAAAAGCTTTTGAGATTACGGGATGATCCTGTACGTGAAGAGTGCCCCCTGATATATCACCTTGATGTAGCTGCAATGTATCCCAACATTATTTTGACAAATAGGCTTCAGCCACCATCAGTAGTTACAGATGAGGATTGTACCGCATGTGATTTCAACCGTCCTGGAAAAACTTGTTTACGAAAACTCGAATGGGTTTGGCGTGGAGAGGTATTCATGGCAAAAAAGAGTGACTATTATCATTTGAAGAAGCAAATTGAGTCCGAGTTTGTTGATAGCGGTAATGTTCGGTTCTCAAAATCATTTCTTGAACTTCCAAAGTTGGAGCAACAGGCAAAGCTCAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCGTATAAACGGGTACTAGATAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATCTGCATGAGAGAGAACTCTTTTTATATTGACACTGTTCGCAGTTTTCGAGATAGAAGGTATGAGTACAAAGGACTCAATAAAGTTTGGAAGGGGAAATTATCAGAAGCTAAAGCTAGTGGAAATTCAATCAAGATCCAGGAAGCACAAGACATGGTGGTTCTGTATGATTCATTACAACTTGCTCATAAATGCATCCTTAACTCCTTCTATGGATATGTGATGCGAAAGGGCGCTCGATGGTATTCAATGGAAATGGCTGGGGTAGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTGTTCTAATTGACAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATCTGGTGTACACTACCTGGATCATTCCCAGAGAACTTTACCTTCAAAACCAAGGATTCAAAGAAGCTGACAATCTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAGGAACAATACAAATGACCAATACCAGACACTCACAGATCCTATAAAGAAGATATATAAAACGCATAGTGAATGCTCAATTGAGTTTGAGGTTGATGGGCCATACAAGGCAATGATCCTTCCAGCTTCTAAGGAAGAGGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAACGATGATGGAACCCTTGCAGAACTCAAAGGTTTTGAGATCAAGCGAAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCATGGTTCCACCCTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTTGATCTTCTAGATAATCAAGGAAAAGATGTTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCTAGTACCATGAGCAAGTCTTTGGCAGACTATGGAGAGCAAAAGTCTTGTGCTGTTACCACTGCAAGACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGAGATAAAGGCCTGCGTTGTCAATATATAGTTGCATGTGAACCCAAGGGAACACCTGTAAGTGAGCGTGCAGTCCCTGTTGCTATATTTGAGACTGATGCAGAGATAATGAAGTTTTATGTACGCAAATGGTGCAAGATATCATCAGAAGTTGGGATTCGATCCATCATTGATTGGTCCTACTACAAGCAACGCCTAAGTTCAGCCATTCAAAAAATTATAACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTGCTACATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGACAAATTTCGCCAGCAGAAAGTCCTCGATATGTTTGCCTCCTCAAGCAGAAGTAAATATTCAAAAAAGGATGATGGTGTTAGCTGCACCAAACATGTGATGAACGAAGAGAATCATGAAGATATAGAAGATTTTCAAAAGAAAATGGGTTCTGCAAATGGCTCCAAACCAGTTGTCCGATGTTATGATGTCAAAGGCAAAAAACATTCAGTGACAAAAGACAGCCATATAGATTCCTCGATACAGAAGAATTCTAATGGTGGAGAAGGATCTTCTCTTTCTTCACCATTGCAATTTGAAGATATTGACAGAAATGTCGATTATCAAGGATGGCTTGAAATAAAGAAGCGAAAGTGGAAGGATACTCTGGATAAGAGGAAGAAGCAAAGATTGGTAAATTTGAAGACTCCACTTCCTGCTAATGGTGTAACACAGGAATTCAATGATGCTATAAATAATCAAGAGGCTCCAGGAAGAACAGGAGTTGGTTCATATTTTAAGAGACAAGAAATATCTGTAACACGCTGCCATTGGCAGATTTTACAGCTTGTTCGCAGTTCAGAGAGTGGCCAATTTTTTGCTTGGGCAGTTGTTGAAGGAGCTATGCTAAAAATTCCTATAAATGTTCCTAGAGTTTTTTACCTTAATTCTAGAGTCCCCATAACTGAAGAATTTGTAGGTAGGCGTGTTAACAAAACTCTTCCCCATGGAAGGCACAGCTATAATCTGTACGAGGTGGTAACAGATGAAGGTCAATTTAGGACACAGAGCAATAAACTTGCAGCCCTCCTTGCAGATCCAGAAGTTGAGGGAATCTATGAAAGGAAGGTGCCGTTAGAGTTCAAATCTGTTTTCCAGATTGGTTGTGTTTGTAAAGTTGATAAAACAGCTAAAAAACGAAGCATCCAGGATGGATGGAGTCTTGATGAACTTCACATGAAGACAACTACTGAATGCTGTTATTTGGAAAAATCTATCTCTTTCTTCTATGTGTATCATAGCATCTCTGAAGGAAGAGCTATCTACATTACCTATTTTCCTGCCACAAGATCGATGGTTGTGGTGGTGGTCAGTCCTTATCAAAACAAGGACTTGTCATCAACTTTTCTTGAAAAGCAGTTTCGTGAAGCTTGCCAAATGCTGTCTGGGCAATCACAACCTCCAAAGAGTGGAATAAATTACAAGGTTGAATATGTTGTCAATGCCAAAGAAGCTGAAGTGATTTTGCAGAGAGCAATTGCACAGCACAGGAGCACAAACCATGGGCCTATTGTAGCTGTTATCGAATGCCCAAATGTGCAGCTGCTGAAGTCAGGTGTGAGAATCTTGGATGATTTTCCATGTGTGAGCATCCCTTCTAATGCTCGTGATAATCAGTATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAAATTGGAATGCAACGCTGTGCTGCATCATCGCAATGGTTGAATGAGAGAATTTCTCTTGCAAGATATGCCCATGTGCCGTTAGGAAATCTTGAACTTGATTGGCTAATATTTACAGGAGATATTTTCTTTTCAAGGGCATTACATGATCAGCAGCAGGTACTTTGGATATCAGATGATGGGGTTCCAGATATAGGAGGCCTCAATGTAGAAGATGCGTGTTTTGCTGATGAGGTTCAACAACCTGTTCTTACATATCCTGGAGCATATAGGAAAATTTCTGTGGAGTTGAAGATTCATCATTTGGCAGTCAATGCTCTTCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGGTGCTTTGTTTGGATTTGAACGTGAAATGCATGGTGGGGCACAACCTTCTAGTGAAGAAGGTGGCTTTGATGAGGATGCATCATATGCTCCAGCATTTCGTGTCCTGAAACAATTGATACAAAGGTGTCTTGCAGATGCAGTTGCATCTGGAAATGTATATGCTGATGCAATATTGCAGCATCTGTACCGATGGATTTGCAGTCCCCAATCAAAACTTCATGATCCTGCTCTCCATCGCTTGCTTCACAAGGTTATGCTAAAGGTTTTTGCTCTTTTGTTGGCTGAATTACGCAAATTGGGTGCTACAATTATTTTTGCGAACTTCTCAAAGGTTATTATAGATACGGGAAGGTTTGATCTCTCTGCTGCTAAGGCATATTGTGATAGCTTGCTGAAAGCACTGCAAACAAGGGATCTTTTTGAATGGATTGAGCTGGAACCATTACGATTCTGGCACTCATTGCTGTTTATGGATCAGTACAATTACGGTGGAATCCCAGCAAGAGATGATGAAGGCTCACATGTTGAATCTCAAGTTGATATTGTATCCAACTGGAACATTGCTGAATATCTACCAAAGAAGATCCAGGATCACTTTGTTTTTATCATCTCTCAATTTCTATATATTCCTTGGAACTATGCAACCAAGCAAGCTGCAACAAGAGCATCTTTGCAGCACGGGGACACATGTACCCCATCCGTTACCGTTGGAGCTGCAGAATCGTTTGAATCACTCATGACGGAGCATCTTAAAGGGCAGCTAAGCTCTTACTTCAGCGACAAACTGTTGGGGATTGTTCGTGATATTGTTCTTCACATGAAAGGGATGGACAAGCCAGAGAATAACCGGGATAGTTTATCAGAGGTTCAACAACCCTCTGGTAGTATCCACAAAGGAGATGCTGCATTGGAGTTCATTAAGCATATCTGTGCCGTTTTGGCTCTTGATCAGAATGTTCAGCATGATGTTCTGGTAATGAGGAAGAATTTACTCAAGTTTGTGCGTGTAAGAGAGTTTGCACCAGAAGCTGAGTTTTCTGATCCCTGCCCGTCATTCATCTTACCTAATGTTATTTGCAGCTATTGTAATGACTGTCGAGATTTGGACTTGTGCCGCGACCCTGCTTTACTGGCACAGGAATGGCGCTGTGCTGTGCCACAATGTGGCCAGCCATACGACCAAGAAGTGATGGAAAACTCTCTTCTTCAAATCGTGCGGCAGAGAGAGCGCCTCTATCATGTGCAGGATTTGGTATGCATTCGTTGCAAGCAGGTAAAAGCGGCGCATTTAACAGAGCAGTGTGCTTGTGCTGGCACATATAAATGCAAGGAAGATGTTGCAGAATTTTTCAGCAAGATGCGAATTTTTCTCAATATAGCAACTCGTCAAAAATTCCAACTACTTGAAGAGTTCACGTCGTGGATCTTAGAAGTTCGATGGTAA 6639 41.2 MSGESRRRGRTDFRSSKKQRLIRSAEEEIESKLGFDLFSEGDKRLGWLLTFAPSSLEEQDTKKVYSCIDLYFVAQDGSGFKSKYKFRPYFYAATKDKMEIDVEAYLRRRYETQIADIEILEKEDLDLKNHLSGLHKAYLKLSFDTVQELMNVKSELLRVVESNWAKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTDVVLEKRKDLLQRAEVHICAFDIETTKLPLKFPDAEYDLVMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEFEGFFKVTNVKNEVELLKLWFAHMREVKPGIYVTYNGDYFDWPFLESRATYHGLKMSDEVGFQCDKNQGECRSRFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVESYKANVVCPNKHQSDSEKFYNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPSAYDQLINNLDRDLQYAIQVEGKLDLESVSNYNDVKNAIMEKLLRLRDDPVREECPLIYHLDVAAMYPNIILTNRLQPPSVVTDEDCTACDFNRPGKTCLRKLEWVWRGEVFMAKKSDYYHLKKQIESEFVDSGNVRFSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARVLIDKIGKPLELDTDGIWCTLPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNDQYQTLTDPIKKIYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDVADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVLHPDWLHKKVREKDDKFRQQKVLDMFASSSRSKYSKKDDGVSCTKHVMNEENHEDIEDFQKKMGSANGSKPVVRCYDVKGKKHSVTKDSHIDSSIQKNSNGGEGSSLSSPLQFEDIDRNVDYQGWLEIKKRKWKDTLDKRKKQRLVNLKTPLPANGVTQEFNDAINNQEAPGRTGVGSYFKRQEISVTRCHWQILQLVRSSESGQFFAWAVVEGAMLKIPINVPRVFYLNSRVPITEEFVGRRVNKTLPHGRHSYNLYEVVTDEGQFRTQSNKLAALLADPEVEGIYERKVPLEFKSVFQIGCVCKVDKTAKKRSIQDGWSLDELHMKTTTECCYLEKSISFFYVYHSISEGRAIYITYFPATRSMVVVVVSPYQNKDLSSTFLEKQFREACQMLSGQSQPPKSGINYKVEYVVNAKEAEVILQRAIAQHRSTNHGPIVAVIECPNVQLLKSGVRILDDFPCVSIPSNARDNQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNLELDWLIFTGDIFFSRALHDQQQVLWISDDGVPDIGGLNVEDACFADEVQQPVLTYPGAYRKISVELKIHHLAVNALLKSNQVNEMEGGALFGFEREMHGGAQPSSEEGGFDEDASYAPAFRVLKQLIQRCLADAVASGNVYADAILQHLYRWICSPQSKLHDPALHRLLHKVMLKVFALLLAELRKLGATIIFANFSKVIIDTGRFDLSAAKAYCDSLLKALQTRDLFEWIELEPLRFWHSLLFMDQYNYGGIPARDDEGSHVESQVDIVSNWNIAEYLPKKIQDHFVFIISQFLYIPWNYATKQAATRASLQHGDTCTPSVTVGAAESFESLMTEHLKGQLSSYFSDKLLGIVRDIVLHMKGMDKPENNRDSLSEVQQPSGSIHKGDAALEFIKHICAVLALDQNVQHDVLVMRKNLLKFVRVREFAPEAEFSDPCPSFILPNVICSYCNDCRDLDLCRDPALLAQEWRCAVPQCGQPYDQEVMENSLLQIVRQRERLYHVQDLVCIRCKQVKAAHLTEQCACAGTYKCKEDVAEFFSKMRIFLNIATRQKFQLLEEFTSWILEVRW 2212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54841846 54865531 + evm.model.ptg000010l.249 HCH2g1255 540480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1255 2212 Gene3D DNA Polymerase, chain B, domain 1 56 233 - -
HCH2g1255 2212 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 945 1120 - -
HCH2g1255 2212 Gene3D - 940 1124 IPR042087 -
HCH2g1255 2212 SMART polmehr3 239 842 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
HCH2g1255 2212 MobiDBLite consensus disorder prediction 1 23 - -
HCH2g1255 2212 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
HCH2g1255 2212 Pfam DNA polymerase family B, exonuclease domain 194 400 IPR006133 -
HCH2g1255 2212 MobiDBLite consensus disorder prediction 1215 1239 - -
HCH2g1255 2212 Gene3D - 238 468 IPR036397 GO:0003676(InterPro)
HCH2g1255 2212 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 3 2180 IPR029703 GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(InterPro)|GO:0008622(PANTHER)|GO:0045004(PANTHER)
HCH2g1255 2212 FunFam DNA polymerase epsilon catalytic subunit 756 936 - -
HCH2g1255 2212 Pfam Domain of unknown function (DUF1744) 1525 1897 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
HCH2g1255 2212 MobiDBLite consensus disorder prediction 1220 1239 - -
HCH2g1255 2212 CDD DNA_polB_epsilon_exo 240 444 - -
HCH2g1255 2212 SUPERFAMILY DNA/RNA polymerases 486 1114 IPR043502 -
HCH2g1255 2212 SMART DUF1744_2 1512 1897 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
HCH2g1255 2212 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
HCH2g1255 2212 CDD POLBc_epsilon 503 1121 - -
HCH2g1255 2212 Pfam Zinc finger domain of DNA polymerase-epsilon 2146 2208 IPR054475 -
HCH2g1255 2212 SUPERFAMILY Ribonuclease H-like 64 490 IPR012337 -
HCH2g1255 2212 Gene3D Palm domain of DNA polymerase 752 936 IPR023211 -
HCH2g1255 2212 FunFam DNA polymerase epsilon catalytic subunit 940 1124 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1255 K02324 - csv:101208568 3999.13