Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1264 ATGGCGAATCATAGAGAGACTGGTGTATCAGTATCAGAATCAGGAGCTTCTAGCCGTCATCTTCTTCCTTATTCACTTCTTTATGGAATTAACAATCCTTCCACAACTTTCATCAATCAAGGTGGAGCAGCTTTCGGTTTTGGAGAGCTGGAACAAGCCATTGTGCTACAAGGACAACGAGTTGTGGATAAAAATGATGAACCTAAACCACCTTTTTTTACAGCCAGGCCTGCAGCAACACTGGAAATGTTCCCTTCTTGGCCAATCAAATTCCAACAAACTCCAAGAGGAAGTTCAAAGTCAAGAGAAGAGAGCGATGAGTCAGGCTCAGCTTCAGCTGTGAATGCTTCTTCTCCTCATACAAGAAACAAAGCTGAAAGCTACTTAGAACAAGAATCTCCAATGAGTAAAAAGGCACCTCTTTCTCCTTCAAATCATAATCATCAGGCTTCTTTTCAGAAGCATCTGCAGCAGATTCATCAGCCAACTGAGATACCTCCTACTGATATCTCAACCAGTGGACCATCACTAAATCAATCACCTCATCAAGAAAAGAGGAAAGGATGTGGTTCCACTTCAACATCAGAGAAACAACTTGACGCTAAGACAATTAGACGTTTGGCTCAGAACAGGGAGGCTGCAAGGAAGAGTCGACTCAGAAAAAAGGCTTACGTTCAGCAGCTAGAAAGCAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTTCAACAAGCACGGTCCCAGGGGCTATTACTGGGTGCTGCGGGTGGCAATATCAGCTCTGGAGCTGCAATATTTGACATGGAATATGCAAGATGGTTGGAAGATGATAACCGGCACATGGCGGAGCTGCGAGCGGGGTTGAATGCGCATTTATCGGACGGCGATCTACGGGTGATGGTAGATGCTTGCATTTGTCACTACGATGAAATTTTCCAGCTGAAAGAAGTTGCTTCCAAATCAGATGTCTTCCATCTCATCACCGGAATGTGGATGACTCCGGCCGAGCGTTGCTTCCTCTGGATTGGTGGTTTCCGGCCCTCCGATCTCATCAAGATGTTAATATCACAAGTAGACCCAATAACAGAACAGCAAATGATGGAAATATACAAGTTACAGCATTCCTCCCAACAGGCAGAAGAGGCTCTCACTCAAGGCCTCGATCAACTCCACCGGTCTCTGGTTGAAACCGTCGCTAACGGCCCCGTTATCGACGGCATCAACCAGATGGTACTAGCCATGACCAAGCTCTCTAATCTCCAAAGCTTCATTCACCAGGCAGATATTCTAAGACAACAAACAGTTCACCAAGTGCATAGAATATTGACCGTACGACAAGCAGCAAGATGTTTTATTGTGATGGGAGAATACTACAACAGATTAAGAGCCCTGAGTTCCCTTTGGGCCTCTCGGCCAAGAGATTGA 1425 45.47 MANHRETGVSVSESGASSRHLLPYSLLYGINNPSTTFINQGGAAFGFGELEQAIVLQGQRVVDKNDEPKPPFFTARPAATLEMFPSWPIKFQQTPRGSSKSREESDESGSASAVNASSPHTRNKAESYLEQESPMSKKAPLSPSNHNHQASFQKHLQQIHQPTEIPPTDISTSGPSLNQSPHQEKRKGCGSTSTSEKQLDAKTIRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQDLQQARSQGLLLGAAGGNISSGAAIFDMEYARWLEDDNRHMAELRAGLNAHLSDGDLRVMVDACICHYDEIFQLKEVASKSDVFHLITGMWMTPAERCFLWIGGFRPSDLIKMLISQVDPITEQQMMEIYKLQHSSQQAEEALTQGLDQLHRSLVETVANGPVIDGINQMVLAMTKLSNLQSFIHQADILRQQTVHQVHRILTVRQAARCFIVMGEYYNRLRALSSLWASRPRD 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 54915243 54919902 + evm.model.ptg000010l.240 HCH2g1264 540489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1264 474 Pfam bZIP transcription factor 201 243 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1264 474 MobiDBLite consensus disorder prediction 137 198 - -
HCH2g1264 474 Pfam Seed dormancy control 280 355 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH2g1264 474 Gene3D - 201 252 - -
HCH2g1264 474 ProSiteProfiles DOG1 domain profile. 263 471 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH2g1264 474 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 200 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1264 474 MobiDBLite consensus disorder prediction 84 201 - -
HCH2g1264 474 CDD bZIP_HBP1b-like 202 253 - -
HCH2g1264 474 SMART brlzneu 198 260 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1264 474 Coils Coil 221 248 - -
HCH2g1264 474 MobiDBLite consensus disorder prediction 108 130 - -
HCH2g1264 474 SUPERFAMILY Leucine zipper domain 202 244 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1264 474 FunFam BZIP family transcription factor 201 250 - -
HCH2g1264 474 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 205 220 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1264 474 PANTHER TRANSCRIPTION FACTOR TGA9 137 474 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0079 HCH-Chr11:1080522 HCH2g1264 HCH-Chr2:54915243 5.70E-16 dispersed
HCH2g1264 HCH-Chr2:54915243 HCH3g1129 HCH-Chr3:34951690 4.10E-151 dispersed
HCH2g1264 HCH-Chr2:54915243 HCH4g0180 HCH-Chr4:1035219 3.30E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33246 PF14144 DOG1 9.10E-31 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1264 K14431 - vvi:100258619 572.007