Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH2g1271 | ATGGCGGAAGAACATCGTTGTCAGGCTCCGAAGCTTTGTGCGAACAACTGCGGTTTTTTCGGGTCTCCAGGGACACAAGATTTCTGTTCCAAATGTTACCGAGATCTCCAGCTCAGCGAACAACAATCTTCCTCCGCCAAATTAGCCCTCAACCAAACCCTAATTTCTCCCGCTTCTTCATCGTCTTCCTCCTCCTCCATTTCCGATGCCTCGTTATTAGATCTCGATCGGCCTTCGCCAATTGTTGTTCCTGATGACGTAGCGCTGCCGGTGCCGGTAACGGTAACGTCGTCGCAATCGCAACCGAGTCGGTGTATGACGTGTAGGAAGCGCGTGGGACTCACGGGGTTCAAGTGTAGGTGTGGGATGACGTATTGTGGGACCCACCGGTACCCGGAGCATCATGGATGTGGATTTGATTTCAAAGGGATGGGGAAGCAACAGATTGCGAAAGCCAATCCTGTCGTCAAGGGGGCGAAGCTTCACAAGATTTGA | 495 | 52.12 | MAEEHRCQAPKLCANNCGFFGSPGTQDFCSKCYRDLQLSEQQSSSAKLALNQTLISPASSSSSSSSISDASLLDLDRPSPIVVPDDVALPVPVTVTSSQSQPSRCMTCRKRVGLTGFKCRCGMTYCGTHRYPEHHGCGFDFKGMGKQQIAKANPVVKGAKLHKI | 164 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 54950458 | 54950952 | - | evm.model.ptg000010l.233 | HCH2g1271 | 540496 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH2g1271 | 164 | Gene3D | - | 1 | 68 | - | - | |
| HCH2g1271 | 164 | Gene3D | - | 87 | 160 | IPR035896 | - | |
| HCH2g1271 | 164 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 8 | 164 | IPR050652 | - | |
| HCH2g1271 | 164 | SMART | A20_3 | 10 | 34 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
| HCH2g1271 | 164 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 12 | 54 | - | - | |
| HCH2g1271 | 164 | SMART | AN1_Zf_4 | 105 | 142 | IPR000058 | GO:0008270(InterPro) | |
| HCH2g1271 | 164 | SUPERFAMILY | AN1-like Zinc finger | 94 | 158 | IPR035896 | - | |
| HCH2g1271 | 164 | FunFam | Zinc finger AN1-type containing 6 | 89 | 160 | - | - | |
| HCH2g1271 | 164 | Pfam | A20-like zinc finger | 12 | 34 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
| HCH2g1271 | 164 | ProSiteProfiles | Zinc finger AN1-type profile. | 99 | 145 | IPR000058 | GO:0008270(InterPro) | |
| HCH2g1271 | 164 | Pfam | AN1-like Zinc finger | 106 | 141 | IPR000058 | GO:0008270(InterPro) | |
| HCH2g1271 | 164 | ProSiteProfiles | Zinc finger A20-type profile. | 7 | 41 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g1271 | HCH-Chr2:54950458 | HCH5g0430 | HCH-Chr5:2886007 | 5.30E-34 | dispersed | |
| HCH2g1271 | HCH-Chr2:54950458 | HCH2g1389 | HCH-Chr2:55666710 | 6.80E-29 | transposed |
Pathway information