Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1271 ATGGCGGAAGAACATCGTTGTCAGGCTCCGAAGCTTTGTGCGAACAACTGCGGTTTTTTCGGGTCTCCAGGGACACAAGATTTCTGTTCCAAATGTTACCGAGATCTCCAGCTCAGCGAACAACAATCTTCCTCCGCCAAATTAGCCCTCAACCAAACCCTAATTTCTCCCGCTTCTTCATCGTCTTCCTCCTCCTCCATTTCCGATGCCTCGTTATTAGATCTCGATCGGCCTTCGCCAATTGTTGTTCCTGATGACGTAGCGCTGCCGGTGCCGGTAACGGTAACGTCGTCGCAATCGCAACCGAGTCGGTGTATGACGTGTAGGAAGCGCGTGGGACTCACGGGGTTCAAGTGTAGGTGTGGGATGACGTATTGTGGGACCCACCGGTACCCGGAGCATCATGGATGTGGATTTGATTTCAAAGGGATGGGGAAGCAACAGATTGCGAAAGCCAATCCTGTCGTCAAGGGGGCGAAGCTTCACAAGATTTGA 495 52.12 MAEEHRCQAPKLCANNCGFFGSPGTQDFCSKCYRDLQLSEQQSSSAKLALNQTLISPASSSSSSSSISDASLLDLDRPSPIVVPDDVALPVPVTVTSSQSQPSRCMTCRKRVGLTGFKCRCGMTYCGTHRYPEHHGCGFDFKGMGKQQIAKANPVVKGAKLHKI 164
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 54950458 54950952 - evm.model.ptg000010l.233 HCH2g1271 540496
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1271 164 Gene3D - 1 68 - -
HCH2g1271 164 Gene3D - 87 160 IPR035896 -
HCH2g1271 164 PANTHER AN1-TYPE ZINC FINGER PROTEIN 8 164 IPR050652 -
HCH2g1271 164 SMART A20_3 10 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
HCH2g1271 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
HCH2g1271 164 SMART AN1_Zf_4 105 142 IPR000058 GO:0008270(InterPro)
HCH2g1271 164 SUPERFAMILY AN1-like Zinc finger 94 158 IPR035896 -
HCH2g1271 164 FunFam Zinc finger AN1-type containing 6 89 160 - -
HCH2g1271 164 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
HCH2g1271 164 ProSiteProfiles Zinc finger AN1-type profile. 99 145 IPR000058 GO:0008270(InterPro)
HCH2g1271 164 Pfam AN1-like Zinc finger 106 141 IPR000058 GO:0008270(InterPro)
HCH2g1271 164 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1271 HCH-Chr2:54950458 HCH5g0430 HCH-Chr5:2886007 5.30E-34 dispersed
HCH2g1271 HCH-Chr2:54950458 HCH2g1389 HCH-Chr2:55666710 6.80E-29 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1271 - - - 0.0