Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1292 ATGTCTAATTCTCGAGCTCCTAACTCTTCTTCGCTTCCGTCGGAGAAGATCATGCAGCCTTTGAAACGGCAGCTTCCGTTTTCTTCTATGAAACCTCCGTTTGCATCTCCTGCTGACTATCACCGCTTCGCTTCGGAACCTAGACTGTCCGATCAGGAACCTGAGGTCATTGTAGTGAAATCTCCGCAGTTAAAGCGGAAGAGTGAGGTTGCAGATTATGAAGCTGAGTCCACTGAAAGGGCAGCTGGTCCTGGATTTGCTGAGGTAGTTAACAGTTCCCATCAAACACCTGTATCTATGAAAGGAGGAAAGGGAAACAAATCAAGGCTAACTAAGTGCAGTAGATCAGGGCCACAAACTCCCATGTCAAATGTTGGTTCACCTTCTGGAAACAACCTTACCCCAGCTGGTCCATGTCGCTATGATAGTTCTCTCGGTCTCTTGACAAAGAAGTTTATTAATCTGATCAAACAAGCAGAAGATGGTATGCTTGATCTAAATAAAGCAGCCGACACATTGGAGGTGCAAAAGAGACGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTAATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCGAGGCCAGGGGATGTTGATGACAATTATGCCGGTCTACAGGCAGAAATAGAAAAACTATCTATTGAAGAACACAGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTGAGGGATCTCAGTGAAGATGAGAACAATCAAAGGTGGCTTTTTGTTACTGAGGAAGACATCAAGGGTCTGCCCTGTTTTGAGAATGAAACTCTCATAGCTATTAAAGCTCCGCACGGAACCACTTTAGAAGTCCCAGATCCTGATGAGGCTGTTGACTATCCCCAGAGGAGATACAAGATAGTCCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAATTTGAAGAGAAGCTTGAAGATATCAATGATGTGGAAGTTCCTCCAAGCTTGCCGTCAAGTTCAGGATTTAATGAGACACTTGCGACGACGGTGGTTATGGAGGATAGCAGAGGGAAGGAACTTGAAATGCGAGAGCAAGATGTTCACAGAATGTGCTCGGATCTAAATGCATCCCAGGACTTTGTGGGTGGTATCATGAAAATTGTCCCCTCGGTAGTTGACAGTGATGCTGATTACTGGCTCTCGTCTGATGCCGATGTTAGTATCACCGACATGTGGAGAACAGAACCTGGGTTTGAGTGGAACGAACTGGGTACGCTTCATGAAGATTACAGTACAGTCAATGTCCACACGCCCACACCGCAAACCCAGAATCTACTACCCAATAATGCACCTGAAGTGCCTTCTTCTGCTAATCCTACTGGCAGCTGA 1398 44.92 MSNSRAPNSSSLPSEKIMQPLKRQLPFSSMKPPFASPADYHRFASEPRLSDQEPEVIVVKSPQLKRKSEVADYEAESTERAAGPGFAEVVNSSHQTPVSMKGGKGNKSRLTKCSRSGPQTPMSNVGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGMLDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEIEKLSIEEHRLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFENETLIAIKAPHGTTLEVPDPDEAVDYPQRRYKIVLRSTMGPIDVYLVSQFEEKLEDINDVEVPPSLPSSSGFNETLATTVVMEDSRGKELEMREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLSSDADVSITDMWRTEPGFEWNELGTLHEDYSTVNVHTPTPQTQNLLPNNAPEVPSSANPTGS 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55039466 55044149 - evm.model.ptg000010l.212 HCH2g1292 540517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1292 465 Coils Coil 156 176 - -
HCH2g1292 465 Gene3D - 212 322 - -
HCH2g1292 465 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH2g1292 465 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
HCH2g1292 465 Gene3D - 134 207 IPR036388 -
HCH2g1292 465 MobiDBLite consensus disorder prediction 109 133 - -
HCH2g1292 465 FunFam E2F transcription factor 1 134 207 - -
HCH2g1292 465 MobiDBLite consensus disorder prediction 1 57 - -
HCH2g1292 465 Coils Coil 218 255 - -
HCH2g1292 465 PANTHER TRANSCRIPTION FACTOR E2F 31 417 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
HCH2g1292 465 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH2g1292 465 MobiDBLite consensus disorder prediction 91 133 - -
HCH2g1292 465 MobiDBLite consensus disorder prediction 1 17 - -
HCH2g1292 465 MobiDBLite consensus disorder prediction 438 465 - -
HCH2g1292 465 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
HCH2g1292 465 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
HCH2g1292 465 CDD E2F_DD 216 322 IPR032198 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1292 K06620 - - csv:101219318 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1292 HCH-Chr2:55039466 HCH4g0786 HCH-Chr4:5086366 4.80E-56 dispersed
HCH2g1292 HCH-Chr2:55039466 HCH9g0455 HCH-Chr9:2913522 9.20E-140 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0306 . 3 375 E2F-DP Transcription Factor Family AT3G48160 57.8 6.2e-108 387.9
HCH11g1000 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 5.0e-59 224.9
HCH2g1292 . 14 457 E2F-DP Transcription Factor Family AT2G36010 52.5 5.1e-117 418.3
HCH9g0455 . 14 433 E2F-DP Transcription Factor Family AT2G36010 55.1 2.5e-116 416.0
HCH2g1292 . 22 462 E2F-DP Transcription Factor Family AT5G22220 55.8 2.3e-114 409.5
HCH4g0786 . 127 390 E2F-DP Transcription Factor Family AT1G47870 51.3 2.4e-64 243.0
HCH11g1000 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 5.0e-59 224.9
HCH2g1292 . 22 462 E2F-DP Transcription Factor Family AT5G22220 55.8 2.3e-114 409.5
HCH2g1292 . 14 457 E2F-DP Transcription Factor Family AT2G36010 52.5 5.1e-117 418.3
HCH9g0455 . 14 433 E2F-DP Transcription Factor Family AT2G36010 55.1 2.5e-116 416.0
HCH4g0786 . 127 390 E2F-DP Transcription Factor Family AT1G47870 51.3 2.4e-64 243.0
HCH3g0306 . 3 375 E2F-DP Transcription Factor Family AT3G48160 57.8 6.2e-108 387.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33252 PF16421 E2F_CC-MB 1.30E-35 No_clan HCH TF