Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1297 ATGGCGACGTACTTTCATGGCGGTTCAGAAATCCAAGGCAATTCTGATGGGATTCATACTCTTTACCTTATGAATCCAAATTACGTACCTTATAATAATTCTGACACTCATAATCATAATCATAATCAATCTCCTCCCAATATGCTATTCCTTAACCCCGCCGGCAACGCGCTTAACCCCGCTTCTCTTTCCCACGCGCCGCCTTCCAACAACCACTTCGTCGGAATCCCACTTCAATCTAACCTTGGATTCACAAATCTCAACGACCCATCTGCTCGTTCTTCCTTGAATCCTCATCACGAGATCTCTACCCTCCATGGCATGCCTGCTCATCGCCTTCACTATAACCTATGGCCTCCTCCTTCAGACCAAACACACACCGGAACCGGAATTTCCTCCGTGTCCGGTGCGGAGTCCACGGATATGGGGTTCCGACGCCTTCCTGTGGTGTCGCCGACACAACAAGGGTTGTCGTTGAGCCTCTCGTCACAACAATCGGCACTCTACCGTCCCACGCTGTCATCGGAGCAAGAAATTCAAGTCACGGCGATTTCTCCGACAAGCGGTGATGATATTCGAGTGTCGGGGAATTCACCGACGTCGGTGTCGGTGGTGTCGAGTGGAATTACCGGCGTCCAGAGTGTCATATTGGGGTCTAAGTACTTGAAAGCAGCACAAGAGCTTCTTGATGAAGTTGTTAATGTTAGCAAAGGGACTAAAACTGACACAGTAGAAGGTACAAGGGATAAGATGAAGATGAAGAAAGAATCAATGGCAGCAATCGGAGAGGGTTCCGGCGGAGGTGAAAGCGGCAGCGCCAAGTCGGCTGCTGAGCTGAGCACAGCACAAAGACAGGAGCTTCAGATGAAGAAGGCTAAGCTTATTGGCATGCTTGACGAGGTGGAGCAGAAGTACAGACAATACCACCAGCAAATGCAAGCAGTGGTATCTTCATTTGAGCAAGCAGCAGGCTTAGGATCAGCCAAATCATACGCCTCCCTCGCTCTCCAGACAATCTCAAAGCAATTTCGAAGCTTAAAAGATGCAATTTGTGGACAAATAAAAGCCACGGGCAAAAGCTTAGGTGAAGATGATTCTCTGAGTGGCAAAGTTGAAGGCTCAAGATTAAGATACGTTGACCATCAGCTTCGACAACAAAGAGCTTTACAGCAACTGGGAATGATTCAACACAATACTTGGAGACCCCAAAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAGCATTTCCTTCATCCATATCCAAAAGATTCTGACAAAGTTATTCTCGCAAAACAAACGGGACTTACTCGAAGCCAAGTGTCTAACTGGTTTATAAATGCAAGAGTTCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAAATCAAAGATCAAGAGCAAAATGACATTAATCCAGAAGACAACAGAAACAAAACCGAACATAACAAGCATCTTCCTGGAGGATTATCATCAGCAACTGCACGGCCTAAAGAGAATGCAGAAGCCATAAGAATGAATCATCAGCTCGATCCAGCTAGATCCAAGACCGAAAACTTAATGATCAACAATCAAAACCCTTCTCTAACTGATCATATTTCCAATTCTTCCATATCATCTTCCTCAATGCTAGGATCACTGCAATCTCACTCCGGCTTCAACCTCATACGACAGTCGACCGACATCCTCGGAAGTCCAAAGAAACCGAGGAATAATCTCGACATCGACGCGAAGCATCTCCACACCACAGCAGAGATGAACATGAATTTTGCAAGAGAAAGACAAGACAAAGATGACTATACATTAATGAACCATGCAGGTTCAAACAATGAAGAAAGTGGTGGATTTGGAGCATACTCAATTGGTGAAATGGGAAGGTTCAATCCTGAGTTATTGACACCAAGGTTTCATGGAAATGGTGTTTCTCTCACTCTTGGGCTTCCACATTCAGATCACAATCTTTCTCTTTCAGGAACCCAACAAAACTATCTCTCCAATCAAAATGTTCAATTAAGAAGGAGGTATGAAATGGGAAACGGAGGAGCCGCCCAATTATTGCCTGATTTTGTGACCTGA 2097 45.4 MATYFHGGSEIQGNSDGIHTLYLMNPNYVPYNNSDTHNHNHNQSPPNMLFLNPAGNALNPASLSHAPPSNNHFVGIPLQSNLGFTNLNDPSARSSLNPHHEISTLHGMPAHRLHYNLWPPPSDQTHTGTGISSVSGAESTDMGFRRLPVVSPTQQGLSLSLSSQQSALYRPTLSSEQEIQVTAISPTSGDDIRVSGNSPTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVNVSKGTKTDTVEGTRDKMKMKKESMAAIGEGSGGGESGSAKSAAELSTAQRQELQMKKAKLIGMLDEVEQKYRQYHQQMQAVVSSFEQAAGLGSAKSYASLALQTISKQFRSLKDAICGQIKATGKSLGEDDSLSGKVEGSRLRYVDHQLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEQNDINPEDNRNKTEHNKHLPGGLSSATARPKENAEAIRMNHQLDPARSKTENLMINNQNPSLTDHISNSSISSSSMLGSLQSHSGFNLIRQSTDILGSPKKPRNNLDIDAKHLHTTAEMNMNFARERQDKDDYTLMNHAGSNNEESGGFGAYSIGEMGRFNPELLTPRFHGNGVSLTLGLPHSDHNLSLSGTQQNYLSNQNVQLRRRYEMGNGGAAQLLPDFVT 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55081650 55084619 + evm.model.ptg000010l.207 HCH2g1297 540522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1297 698 Coils Coil 284 311 - -
HCH2g1297 698 CDD homeodomain 400 461 IPR001356 GO:0003677(InterPro)
HCH2g1297 698 Gene3D - 403 465 - -
HCH2g1297 698 SUPERFAMILY Homeodomain-like 401 466 IPR009057 -
HCH2g1297 698 FunFam BEL1-like homeodomain protein 9 403 465 - -
HCH2g1297 698 MobiDBLite consensus disorder prediction 259 282 - -
HCH2g1297 698 MobiDBLite consensus disorder prediction 473 491 - -
HCH2g1297 698 SMART prehox3 210 352 IPR006563 -
HCH2g1297 698 ProSiteProfiles 'Homeobox' domain profile. 397 460 IPR001356 GO:0003677(InterPro)
HCH2g1297 698 MobiDBLite consensus disorder prediction 473 505 - -
HCH2g1297 698 SMART HOX_1 400 464 IPR001356 GO:0003677(InterPro)
HCH2g1297 698 Pfam Associated with HOX 215 350 IPR006563 -
HCH2g1297 698 Pfam Homeobox KN domain 417 456 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH2g1297 698 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 162 492 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0479 HCH-Chr2:48310821 HCH2g1297 HCH-Chr2:55081650 1.90E-85 dispersed
HCH2g1297 HCH-Chr2:55081650 HCH4g1319 HCH-Chr4:9296258 1.20E-66 dispersed
HCH11g0479 HCH-Chr11:5458923 HCH2g1297 HCH-Chr2:55081650 1.20E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33253 PF07526 POX 1.50E-48 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1297 - - - 0.0