Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1305 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTTCCATGCAACAGCATGTTCAACCTTGTGACTGTGAGATGTGGGCATTGTTCTAATCTGCTGACTGTCAATATGGGAGCTTCACTTCAAGTAGTTCCTCCCCAAGATTCCCAGCAGTCTCATAAACAGCAGCAGCTGAGCCTTGGGGATTCGATTAAGGACAGAGGTTCATCTTCTAAATGCAATAAAATTGGCAACCTTGACTCTGTTGAGCGTGACCGTGACCAACATAGAATCCCTCCTATTCGTCCACCAGAGAAAAGACAACGAGTTCCTTCTGCATATAATAGGTTCATTAAAGAGGAGATCCAAAGGATTAAGGCTAATAATCCTGATATAAGTCACAGAGAAGCATTTAGCACTGCTGCTAAAAATTGGGCGCATTTCCCTCACATTCACTTTGGTCTGAAGCTGGATGAAAATAAGCAAACAAATTGA 516 42.83 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFNLVTVRCGHCSNLLTVNMGASLQVVPPQDSQQSHKQQQLSLGDSIKDRGSSSKCNKIGNLDSVERDRDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDENKQTN 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55147352 55151861 - evm.model.ptg000010l.199 HCH2g1305 540530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1305 171 MobiDBLite consensus disorder prediction 92 111 - -
HCH2g1305 171 SUPERFAMILY HMG-box 107 156 IPR036910 -
HCH2g1305 171 CDD HMG-box_SF 116 152 - -
HCH2g1305 171 Pfam YABBY protein 7 162 IPR006780 GO:0007275(InterPro)
HCH2g1305 171 MobiDBLite consensus disorder prediction 60 117 - -
HCH2g1305 171 FunFam Axial regulator YABBY 107 171 - -
HCH2g1305 171 Gene3D High mobility group box domain 98 166 IPR036910 -
HCH2g1305 171 PANTHER PROTEIN YABBY 6-RELATED 6 169 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
HCH2g1305 171 MobiDBLite consensus disorder prediction 60 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1305 K25796 - - csv:101222154 293.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1305 HCH-Chr2:55147352 HCH8g0848 HCH-Chr8:44945370 6.60E-43 dispersed
HCH2g1305 HCH-Chr2:55147352 HCH10g0406 HCH-Chr10:3243254 6.80E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0866 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 5.5e-48 187.6
HCH5g0398 . 73 230 C2C2-YABBY Transcription Factor Family AT2G45190 62.0 9.5e-47 183.3
HCH2g1305 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.7 1.7e-52 202.6
HCH10g0406 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.2e-42 169.9
HCH5g0398 . 30 220 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.1e-42 169.1
HCH6g0989 . 18 198 C2C2-YABBY Transcription Factor Family AT1G08465 52.4 1.3e-41 166.4
HCH8g0848 . 5 172 C2C2-YABBY Transcription Factor Family AT1G08465 53.2 1.3e-41 166.4
HCH5g0398 . 40 229 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 7.3e-52 200.7
HCH6g0989 . 28 219 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 1.8e-42 169.5
HCH1g1044 . 1 170 C2C2-YABBY Transcription Factor Family AT1G23420 56.0 6.8e-39 157.9
HCH4g0030 . 2 181 C2C2-YABBY Transcription Factor Family AT1G23420 51.1 2.8e-37 152.5
HCH10g0406 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 70.5 1.1e-60 229.6
HCH8g0848 . 7 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.9 4.8e-59 224.2
HCH2g1305 . 1 170 C2C2-YABBY Transcription Factor Family AT2G26580 58.5 1.7e-48 189.1
HCH5g0398 . 30 194 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 1.5e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33254 PF04690 YABBY 1.00E-73 CL0114 HCH TF