Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1305 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTTCCATGCAACAGCATGTTCAACCTTGTGACTGTGAGATGTGGGCATTGTTCTAATCTGCTGACTGTCAATATGGGAGCTTCACTTCAAGTAGTTCCTCCCCAAGATTCCCAGCAGTCTCATAAACAGCAGCAGCTGAGCCTTGGGGATTCGATTAAGGACAGAGGTTCATCTTCTAAATGCAATAAAATTGGCAACCTTGACTCTGTTGAGCGTGACCGTGACCAACATAGAATCCCTCCTATTCGTCCACCAGAGAAAAGACAACGAGTTCCTTCTGCATATAATAGGTTCATTAAAGAGGAGATCCAAAGGATTAAGGCTAATAATCCTGATATAAGTCACAGAGAAGCATTTAGCACTGCTGCTAAAAATTGGGCGCATTTCCCTCACATTCACTTTGGTCTGAAGCTGGATGAAAATAAGCAAACAAATTGA 516 42.83 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFNLVTVRCGHCSNLLTVNMGASLQVVPPQDSQQSHKQQQLSLGDSIKDRGSSSKCNKIGNLDSVERDRDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDENKQTN 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55147352 55151861 - evm.model.ptg000010l.199 HCH2g1305 540530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1305 171 MobiDBLite consensus disorder prediction 92 111 - -
HCH2g1305 171 SUPERFAMILY HMG-box 107 156 IPR036910 -
HCH2g1305 171 CDD HMG-box_SF 116 152 - -
HCH2g1305 171 Pfam YABBY protein 7 162 IPR006780 GO:0007275(InterPro)
HCH2g1305 171 MobiDBLite consensus disorder prediction 60 117 - -
HCH2g1305 171 FunFam Axial regulator YABBY 107 171 - -
HCH2g1305 171 Gene3D High mobility group box domain 98 166 IPR036910 -
HCH2g1305 171 PANTHER PROTEIN YABBY 6-RELATED 6 169 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
HCH2g1305 171 MobiDBLite consensus disorder prediction 60 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1305 HCH-Chr2:55147352 HCH8g0848 HCH-Chr8:44945370 6.60E-43 dispersed
HCH2g1305 HCH-Chr2:55147352 HCH10g0406 HCH-Chr10:3243254 6.80E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33254 PF04690 YABBY 1.00E-73 CL0114 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1305 K25796 - csv:101222154 293.893