Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g1305 | ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTGAGTGTTCCATGCAACAGCATGTTCAACCTTGTGACTGTGAGATGTGGGCATTGTTCTAATCTGCTGACTGTCAATATGGGAGCTTCACTTCAAGTAGTTCCTCCCCAAGATTCCCAGCAGTCTCATAAACAGCAGCAGCTGAGCCTTGGGGATTCGATTAAGGACAGAGGTTCATCTTCTAAATGCAATAAAATTGGCAACCTTGACTCTGTTGAGCGTGACCGTGACCAACATAGAATCCCTCCTATTCGTCCACCAGAGAAAAGACAACGAGTTCCTTCTGCATATAATAGGTTCATTAAAGAGGAGATCCAAAGGATTAAGGCTAATAATCCTGATATAAGTCACAGAGAAGCATTTAGCACTGCTGCTAAAAATTGGGCGCATTTCCCTCACATTCACTTTGGTCTGAAGCTGGATGAAAATAAGCAAACAAATTGA | 516 | 42.83 | MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFNLVTVRCGHCSNLLTVNMGASLQVVPPQDSQQSHKQQQLSLGDSIKDRGSSSKCNKIGNLDSVERDRDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDENKQTN | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 55147352 | 55151861 | - | evm.model.ptg000010l.199 | HCH2g1305 | 540530 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g1305 | 171 | MobiDBLite | consensus disorder prediction | 92 | 111 | - | - | |
HCH2g1305 | 171 | SUPERFAMILY | HMG-box | 107 | 156 | IPR036910 | - | |
HCH2g1305 | 171 | CDD | HMG-box_SF | 116 | 152 | - | - | |
HCH2g1305 | 171 | Pfam | YABBY protein | 7 | 162 | IPR006780 | GO:0007275(InterPro) | |
HCH2g1305 | 171 | MobiDBLite | consensus disorder prediction | 60 | 117 | - | - | |
HCH2g1305 | 171 | FunFam | Axial regulator YABBY | 107 | 171 | - | - | |
HCH2g1305 | 171 | Gene3D | High mobility group box domain | 98 | 166 | IPR036910 | - | |
HCH2g1305 | 171 | PANTHER | PROTEIN YABBY 6-RELATED | 6 | 169 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER) | |
HCH2g1305 | 171 | MobiDBLite | consensus disorder prediction | 60 | 91 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g1305 | HCH-Chr2:55147352 | HCH8g0848 | HCH-Chr8:44945370 | 6.60E-43 | dispersed | |
HCH2g1305 | HCH-Chr2:55147352 | HCH10g0406 | HCH-Chr10:3243254 | 6.80E-48 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33254 | PF04690 | YABBY | 1.00E-73 | CL0114 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH2g1305 | K25796 | - | csv:101222154 | 293.893 |