Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1306 ATGGCGGATATTAGGAAATGGTTCATGAAAGCACACGATAAAGATAATGGCGCTGCGTCTAAGAGTGTAAAACCTGCGCCGAGCAAGTTAGAGAATTCCGCGACGGCTAAATCGCAGTCTGAAAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGAAGAAGGATAACCAGTAAGTATTTTGCCTCAGAAAAGCAGAAGCCTAAGGATGCAAAAGAACCAGAGGAACTCCCGGTCAAAAGAAAGACTCCACAGGATGTCAAAGAATCACCGGCCAAAAGAAAGTCTCAAAAGGATGGAGAGGAATCACTAAAAGCTCCGCCTTCAAAAAAATCAAACAAAATTGATGACAATGATAGTGATTTTGTCTTGCCTACTTCTAGAAAGAATTCGTCTGATGTCACACCTAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTGCACAGAAGCCGGTAGCAGTTGCAGAAAGTGATGATGAGGAAGATAAAAGTACCGAGCCTTCTCTGAAGCCTAGTGGAAGGGGTAGGGGTGGAAGAGCTTCGTCTGCCACAACCGGTAGTGGTAGAGGCAGAGGTGGTGGACGGGGTGGGTTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGACATCCCTGAAGGTGCTCCTGACTGTTTAGCTGGTTTAACTTTTGTAGTTAGTGGAACACTAGACAGTTTGGAACGAGAGGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGAGTCACTGGATCTGTCAGCAAAAAAACAAGTTACCTTCTATGTGATGAAGATATTGGAGGCCGAAAATCCTCCAAAGCCAAAGAGCTGGGAACTTCTTTTCTCACAGAGGATGGCTTATTTGACATGATTCGTGCATCATTAGGCTCAAAAGCCCCTCCAATGGAAAAGTCTAAAAAATCTGTGGTTAAGTCTACTGAATCCCCAACCGAGAAGAATTCCCAAAAAGTACAAGCAAAGAAAGGTAGTGTCAACCATTCCTTGACTACGGATGTCCAACGCAAAGATCTCACTGCTGGAACTTCACCTGCTAAGCATAGAGGACAAACTATTGAACGCTCTTCCTTGACATGGACAGAAAAGTATAAGCCAAAAGTTCCAAATGACATTATAGGAAATCAGTCACTGGTTAAGCAACTTCATGATTGGTTGGAACATTGGAATGATAACTTTCTTGATGCTGGAAGCAAAAATAAGGGTAAAAAGCTCAATGATTCTGGCACCAAAAAAGCTGTCTTATTATGTGGAGGTCCTGGCATAGGTAAAACTACGTCTGCAAAGTTGGTTAGTCAGATGCTTGGTTATCAGGCTATAGAGGTAAATGCCAGTGACGGTCGTGGTAAAGCAGATGCTAAAATTGAGAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTCATTAGTAATGATTCCTTCCGTTTCAGAACTGATCAGCCAAAACATCCAAAAACTGTGTTGATTATGGATGAGGTTGATGGAATGTCTGCTGGAGATAGAGGTGGAGTTGCTGATCTAATTGCCAGCATTAAAATCTCCAAAATTCCCATTATCTGCATTTGTAATGACCGCTACAGCCAGAAGCTGAAAAGCCTTGTGAATTACTGTTTGCTTCTCAGCTTTAGAAAACCTACAAAACAACAGATGGCAAAAAGATTACTCCAAGTTGCAAGTGCAGAAGGCCTTCAAGTAAACGAGATTGCGCTTGAGGAACTTGCAGAAAGAGTTAATGGGGATATGCGCATGGCACTCAACCAGTTACAGTACATGAGTCTGTCAATGCCGGTCATTAAGTATGATGATATCCGCCAACGCCTTCTTAGCAGTATGAAAGATGAAGATATCTCACCATTCAATGCTGTGGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATAGATCTGAGCATGAGTGATCCTGATCTGGTCCCTCTTCTTATTCAGGAAAATTATATAAACTATAGGCCAAGTACTGTTACTAAGGATGAAAATGGGATCAAACGGATGGATTTAATTGCCCGTGCAGCAGAATCTATAGCAGATGGGGATCTATTCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAATAGTTCGCTTTCTTCTTGTATAATTCCAGCTTCATTATTGCATGGACAAAGAGAAACACTTGTACAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGTTGGGGAAAAATTCAACATTTGGGAAAAATATGAGGCTTTTGGAAGATTTGCACGTTCACATTCTTGCTTCTCGTGAATCTAGTGCTGGGAGAGAACATATACGAGTGGAGAACCTTACTCTACTCTTGAAAAGGTTGACTGAGCCACTGCGTGTGCTGCCTAAGGATGAAGCTGTAAAAACGGTTGTAGAATTTATGAGTCTATATTCAATCAGTCAAGAAGATTTTGATACAATTATGGAGTTGTCAAAATTTCAGGGTCGTGCAAATCCCTTGGATGGCATAACCCCTGCTGTCAAAGCAGCTTTAACAAAAGCATATAAAGAAGTGAGCAAAACACATATGGTACGGGCTGCAGATCTTATCACACTGCCTGGATTGAAAAAGGCCCCTAAGAAGCGAATTGCAGCAATTTTAGAACCTCCTGAGGATAGAATCGAAGATGTTGGTGGAGAAACAGTGGTAGAAAGTGAAGAAGAGAACTCTTCAGACAATGAGGGTTTGGAAGACACAACAAACAGCGAGAAACTGCAAGTTGAACTCCAAAGTTTGAATAGGAAAGGGATGCAAGTTCAGTTGGATTTGAAGGGCAAGGAAAGTTCAAGCTCCAAGAAACCAGGCGGCAGGGGTAAAGGTGGTGGTTCCCAGGCCGCAGATAAGAAAGGCGGGCGAGGTTCAGGATCTGCCACAAAGAGGAAGAGATGA 2955 42.44 MADIRKWFMKAHDKDNGAASKSVKPAPSKLENSATAKSQSEKTGPSGGESTGRRITSKYFASEKQKPKDAKEPEELPVKRKTPQDVKESPAKRKSQKDGEESLKAPPSKKSNKIDDNDSDFVLPTSRKNSSDVTPNKKLKSGSGKGIAQKPVAVAESDDEEDKSTEPSLKPSGRGRGGRASSATTGSGRGRGGGRGGFMNFGERKDPPHKGEKDIPEGAPDCLAGLTFVVSGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDEDIGGRKSSKAKELGTSFLTEDGLFDMIRASLGSKAPPMEKSKKSVVKSTESPTEKNSQKVQAKKGSVNHSLTTDVQRKDLTAGTSPAKHRGQTIERSSLTWTEKYKPKVPNDIIGNQSLVKQLHDWLEHWNDNFLDAGSKNKGKKLNDSGTKKAVLLCGGPGIGKTTSAKLVSQMLGYQAIEVNASDGRGKADAKIEKGIGGSNANSIKELISNDSFRFRTDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLLQVASAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMPVIKYDDIRQRLLSSMKDEDISPFNAVDKLFGFNSGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSTVTKDENGIKRMDLIARAAESIADGDLFNVQIRRHRQWQLSQNSSLSSCIIPASLLHGQRETLVQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESSAGREHIRVENLTLLLKRLTEPLRVLPKDEAVKTVVEFMSLYSISQEDFDTIMELSKFQGRANPLDGITPAVKAALTKAYKEVSKTHMVRAADLITLPGLKKAPKKRIAAILEPPEDRIEDVGGETVVESEEENSSDNEGLEDTTNSEKLQVELQSLNRKGMQVQLDLKGKESSSSKKPGGRGKGGGSQAADKKGGRGSGSATKRKR 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55155634 55164914 + evm.model.ptg000010l.198 HCH2g1306 540531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1306 984 Gene3D - 628 739 - -
HCH2g1306 984 MobiDBLite consensus disorder prediction 202 217 - -
HCH2g1306 984 ProSiteProfiles BRCT domain profile. 218 296 IPR001357 -
HCH2g1306 984 MobiDBLite consensus disorder prediction 154 169 - -
HCH2g1306 984 MobiDBLite consensus disorder prediction 1 220 - -
HCH2g1306 984 MobiDBLite consensus disorder prediction 59 122 - -
HCH2g1306 984 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 92 954 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
HCH2g1306 984 PIRSF RFC1 1 958 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
HCH2g1306 984 Gene3D - 367 555 IPR027417 -
HCH2g1306 984 Pfam Replication factor RFC1 C terminal domain 696 858 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
HCH2g1306 984 FunFam Replication factor C subunit 1 628 737 - -
HCH2g1306 984 Gene3D - 556 626 - -
HCH2g1306 984 SMART BRCT_7 220 298 IPR001357 -
HCH2g1306 984 MobiDBLite consensus disorder prediction 922 939 - -
HCH2g1306 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 616 IPR027417 -
HCH2g1306 984 Gene3D BRCT domain 195 297 IPR036420 -
HCH2g1306 984 MobiDBLite consensus disorder prediction 318 367 - -
HCH2g1306 984 CDD BRCT_RFC1 218 296 - -
HCH2g1306 984 FunFam Replication factor C subunit 1 194 297 - -
HCH2g1306 984 FunFam Replication factor C subunit 1 556 627 - -
HCH2g1306 984 CDD AAA 408 519 - -
HCH2g1306 984 FunFam Replication factor C subunit 1 367 555 - -
HCH2g1306 984 Pfam BRCA1 C Terminus (BRCT) domain 220 295 IPR001357 -
HCH2g1306 984 SUPERFAMILY BRCT domain 218 297 IPR036420 -
HCH2g1306 984 MobiDBLite consensus disorder prediction 26 58 - -
HCH2g1306 984 MobiDBLite consensus disorder prediction 302 367 - -
HCH2g1306 984 CDD HLD_clamp_RFC 556 614 IPR047854 -
HCH2g1306 984 MobiDBLite consensus disorder prediction 123 138 - -
HCH2g1306 984 Pfam ATPase family associated with various cellular activities (AAA) 423 535 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH2g1306 984 MobiDBLite consensus disorder prediction 1 19 - -
HCH2g1306 984 SMART AAA_5 419 557 IPR003593 GO:0016887(InterPro)
HCH2g1306 984 MobiDBLite consensus disorder prediction 889 984 - -
HCH2g1306 984 SUPERFAMILY post-AAA+ oligomerization domain-like 627 772 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1306 K10754 - - csv:101204361 1476.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1306 HCH-Chr2:55155634 HCH7g1411 HCH-Chr7:46835732 1.80E-20 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0450 . 2 864 Core DNA Replication Machinery Family AT4G14700 60.8 3.0e-287 984.6
HCH8g0450 . 1 864 Core DNA Replication Machinery Family AT4G12620 61.8 6.9e-292 1000.0
HCH4g0661 . 2 361 Core DNA Replication Machinery Family AT2G37560 68.3 3.9e-143 504.6
HCH13g1125 . 1 511 Core DNA Replication Machinery Family AT4G29910 57.9 6.1e-170 594.3
HCH4g0881 . 1 274 Core DNA Replication Machinery Family AT1G26840 66.4 3.5e-97 351.7
HCH7g0032 . 1 807 Core DNA Replication Machinery Family AT1G79150 57.5 2.6e-246 848.6
HCH5g1143 . 4 929 Core DNA Replication Machinery Family AT1G44900 76.0 0.0e+00 1352.8
HCH14g1057 . 1 578 Core DNA Replication Machinery Family AT5G46280 80.1 2.2e-268 921.4
HCH7g0533 . 1 843 Core DNA Replication Machinery Family AT2G16440 72.7 0.0e+00 1184.5
HCH10g0354 . 1 737 Core DNA Replication Machinery Family AT2G07690 76.9 0.0e+00 1097.8
HCH14g1202 . 6 829 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1169.8
HCH4g1075 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.3 0.0e+00 1204.9
HCH2g1033 . 39 523 Core DNA Replication Machinery Family AT2G29680 58.8 1.3e-158 556.6
HCH2g1033 . 27 484 Core DNA Replication Machinery Family AT1G07270 59.0 2.0e-142 502.7
HCH5g1013 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 6.7e-260 893.3
HCH11g0249 . 27 821 Core DNA Replication Machinery Family AT3G09660 71.1 0.0e+00 1083.2
HCH4g1702 . 6 474 Core DNA Replication Machinery Family AT2G14050 77.9 5.1e-213 737.6
HCH2g0555 . 6 408 Core DNA Replication Machinery Family AT2G20980 55.8 1.4e-117 419.9
HCH12g0839 . 2 971 Core DNA Replication Machinery Family AT1G77320 50.8 1.8e-265 912.5
HCH4g1324 . 1 199 Core DNA Replication Machinery Family AT1G80190 69.3 2.0e-78 288.9
HCH11g0967 . 1 145 Core DNA Replication Machinery Family AT3G12530 70.3 9.8e-59 223.0
HCH13g0552 . 1 184 Core DNA Replication Machinery Family AT1G19080 65.8 1.1e-64 243.0
HCH13g0552 . 1 184 Core DNA Replication Machinery Family AT3G55490 65.8 1.1e-64 243.0
HCH7g1637 . 15 162 Core DNA Replication Machinery Family AT5G49010 63.3 4.0e-49 191.4
HCH2g0050 . 11 1542 Core DNA Replication Machinery Family AT5G67100 61.6 0.0e+00 1795.8
HCH6g1471 . 2 621 Core DNA Replication Machinery Family AT1G67630 62.0 1.3e-221 766.1
HCH10g0085 . 1 446 Core DNA Replication Machinery Family AT1G67320 65.3 9.0e-186 646.7
HCH6g1260 . 1 453 Core DNA Replication Machinery Family AT5G41880 64.0 1.3e-175 612.8
HCH14g0101 . 17 1087 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1769.6
HCH11g0564 . 1 441 Core DNA Replication Machinery Family AT2G42120 77.6 9.2e-206 713.0
HCH10g0085 . 1 446 Core DNA Replication Machinery Family AT1G67320 65.3 9.0e-186 646.7
HCH2g1255 . 1 2101 Core DNA Replication Machinery Family AT1G08260 70.9 0.0e+00 2978.3
HCH2g1255 . 24 2208 Core DNA Replication Machinery Family AT2G27120 67.9 0.0e+00 2946.8
HCH2g1306 . 1 938 Core DNA Replication Machinery Family AT5G22010 64.1 1.4e-309 1058.9
HCH6g0944 . 1 332 Core DNA Replication Machinery Family AT1G63160 91.0 7.0e-174 606.7
HCH9g0927 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.9 1.5e-179 625.5
HCH12g0832 . 1 334 Core DNA Replication Machinery Family AT1G21690 80.9 4.0e-153 537.7
HCH13g0142 . 1 354 Core DNA Replication Machinery Family AT1G77470 76.4 4.4e-153 537.7
HCH10g0561 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.8 3.9e-255 877.5
HCH6g1164 . 33 698 Core DNA Replication Machinery Family AT2G06510 53.0 2.0e-203 705.7
HCH8g1241 . 1 623 Core DNA Replication Machinery Family AT5G08020 71.6 3.1e-257 884.4
HCH6g1164 . 7 731 Core DNA Replication Machinery Family AT5G45400 55.0 4.8e-227 784.6
HCH8g1241 . 1 623 Core DNA Replication Machinery Family AT5G61000 69.3 2.1e-251 865.1
HCH6g1164 . 7 731 Core DNA Replication Machinery Family AT4G19130 58.6 1.1e-233 806.6
HCH8g0012 . 1 359 Core DNA Replication Machinery Family AT5G26680 87.7 1.3e-180 629.4
HCH7g1488 . 1 1110 Core DNA Replication Machinery Family AT1G08840 54.2 2.0e-312 1068.5
HCH2g1211 . 145 781 Core DNA Replication Machinery Family AT1G08130 77.1 1.0e-292 1002.7
HCH2g1211 . 181 781 Core DNA Replication Machinery Family AT1G49250 68.3 1.9e-239 825.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009501 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33