Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH2g1306 | ATGGCGGATATTAGGAAATGGTTCATGAAAGCACACGATAAAGATAATGGCGCTGCGTCTAAGAGTGTAAAACCTGCGCCGAGCAAGTTAGAGAATTCCGCGACGGCTAAATCGCAGTCTGAAAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGAAGAAGGATAACCAGTAAGTATTTTGCCTCAGAAAAGCAGAAGCCTAAGGATGCAAAAGAACCAGAGGAACTCCCGGTCAAAAGAAAGACTCCACAGGATGTCAAAGAATCACCGGCCAAAAGAAAGTCTCAAAAGGATGGAGAGGAATCACTAAAAGCTCCGCCTTCAAAAAAATCAAACAAAATTGATGACAATGATAGTGATTTTGTCTTGCCTACTTCTAGAAAGAATTCGTCTGATGTCACACCTAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTGCACAGAAGCCGGTAGCAGTTGCAGAAAGTGATGATGAGGAAGATAAAAGTACCGAGCCTTCTCTGAAGCCTAGTGGAAGGGGTAGGGGTGGAAGAGCTTCGTCTGCCACAACCGGTAGTGGTAGAGGCAGAGGTGGTGGACGGGGTGGGTTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGACATCCCTGAAGGTGCTCCTGACTGTTTAGCTGGTTTAACTTTTGTAGTTAGTGGAACACTAGACAGTTTGGAACGAGAGGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGAGTCACTGGATCTGTCAGCAAAAAAACAAGTTACCTTCTATGTGATGAAGATATTGGAGGCCGAAAATCCTCCAAAGCCAAAGAGCTGGGAACTTCTTTTCTCACAGAGGATGGCTTATTTGACATGATTCGTGCATCATTAGGCTCAAAAGCCCCTCCAATGGAAAAGTCTAAAAAATCTGTGGTTAAGTCTACTGAATCCCCAACCGAGAAGAATTCCCAAAAAGTACAAGCAAAGAAAGGTAGTGTCAACCATTCCTTGACTACGGATGTCCAACGCAAAGATCTCACTGCTGGAACTTCACCTGCTAAGCATAGAGGACAAACTATTGAACGCTCTTCCTTGACATGGACAGAAAAGTATAAGCCAAAAGTTCCAAATGACATTATAGGAAATCAGTCACTGGTTAAGCAACTTCATGATTGGTTGGAACATTGGAATGATAACTTTCTTGATGCTGGAAGCAAAAATAAGGGTAAAAAGCTCAATGATTCTGGCACCAAAAAAGCTGTCTTATTATGTGGAGGTCCTGGCATAGGTAAAACTACGTCTGCAAAGTTGGTTAGTCAGATGCTTGGTTATCAGGCTATAGAGGTAAATGCCAGTGACGGTCGTGGTAAAGCAGATGCTAAAATTGAGAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTCATTAGTAATGATTCCTTCCGTTTCAGAACTGATCAGCCAAAACATCCAAAAACTGTGTTGATTATGGATGAGGTTGATGGAATGTCTGCTGGAGATAGAGGTGGAGTTGCTGATCTAATTGCCAGCATTAAAATCTCCAAAATTCCCATTATCTGCATTTGTAATGACCGCTACAGCCAGAAGCTGAAAAGCCTTGTGAATTACTGTTTGCTTCTCAGCTTTAGAAAACCTACAAAACAACAGATGGCAAAAAGATTACTCCAAGTTGCAAGTGCAGAAGGCCTTCAAGTAAACGAGATTGCGCTTGAGGAACTTGCAGAAAGAGTTAATGGGGATATGCGCATGGCACTCAACCAGTTACAGTACATGAGTCTGTCAATGCCGGTCATTAAGTATGATGATATCCGCCAACGCCTTCTTAGCAGTATGAAAGATGAAGATATCTCACCATTCAATGCTGTGGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATAGATCTGAGCATGAGTGATCCTGATCTGGTCCCTCTTCTTATTCAGGAAAATTATATAAACTATAGGCCAAGTACTGTTACTAAGGATGAAAATGGGATCAAACGGATGGATTTAATTGCCCGTGCAGCAGAATCTATAGCAGATGGGGATCTATTCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAATAGTTCGCTTTCTTCTTGTATAATTCCAGCTTCATTATTGCATGGACAAAGAGAAACACTTGTACAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGTTGGGGAAAAATTCAACATTTGGGAAAAATATGAGGCTTTTGGAAGATTTGCACGTTCACATTCTTGCTTCTCGTGAATCTAGTGCTGGGAGAGAACATATACGAGTGGAGAACCTTACTCTACTCTTGAAAAGGTTGACTGAGCCACTGCGTGTGCTGCCTAAGGATGAAGCTGTAAAAACGGTTGTAGAATTTATGAGTCTATATTCAATCAGTCAAGAAGATTTTGATACAATTATGGAGTTGTCAAAATTTCAGGGTCGTGCAAATCCCTTGGATGGCATAACCCCTGCTGTCAAAGCAGCTTTAACAAAAGCATATAAAGAAGTGAGCAAAACACATATGGTACGGGCTGCAGATCTTATCACACTGCCTGGATTGAAAAAGGCCCCTAAGAAGCGAATTGCAGCAATTTTAGAACCTCCTGAGGATAGAATCGAAGATGTTGGTGGAGAAACAGTGGTAGAAAGTGAAGAAGAGAACTCTTCAGACAATGAGGGTTTGGAAGACACAACAAACAGCGAGAAACTGCAAGTTGAACTCCAAAGTTTGAATAGGAAAGGGATGCAAGTTCAGTTGGATTTGAAGGGCAAGGAAAGTTCAAGCTCCAAGAAACCAGGCGGCAGGGGTAAAGGTGGTGGTTCCCAGGCCGCAGATAAGAAAGGCGGGCGAGGTTCAGGATCTGCCACAAAGAGGAAGAGATGA | 2955 | 42.44 | MADIRKWFMKAHDKDNGAASKSVKPAPSKLENSATAKSQSEKTGPSGGESTGRRITSKYFASEKQKPKDAKEPEELPVKRKTPQDVKESPAKRKSQKDGEESLKAPPSKKSNKIDDNDSDFVLPTSRKNSSDVTPNKKLKSGSGKGIAQKPVAVAESDDEEDKSTEPSLKPSGRGRGGRASSATTGSGRGRGGGRGGFMNFGERKDPPHKGEKDIPEGAPDCLAGLTFVVSGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDEDIGGRKSSKAKELGTSFLTEDGLFDMIRASLGSKAPPMEKSKKSVVKSTESPTEKNSQKVQAKKGSVNHSLTTDVQRKDLTAGTSPAKHRGQTIERSSLTWTEKYKPKVPNDIIGNQSLVKQLHDWLEHWNDNFLDAGSKNKGKKLNDSGTKKAVLLCGGPGIGKTTSAKLVSQMLGYQAIEVNASDGRGKADAKIEKGIGGSNANSIKELISNDSFRFRTDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLLQVASAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMPVIKYDDIRQRLLSSMKDEDISPFNAVDKLFGFNSGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSTVTKDENGIKRMDLIARAAESIADGDLFNVQIRRHRQWQLSQNSSLSSCIIPASLLHGQRETLVQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESSAGREHIRVENLTLLLKRLTEPLRVLPKDEAVKTVVEFMSLYSISQEDFDTIMELSKFQGRANPLDGITPAVKAALTKAYKEVSKTHMVRAADLITLPGLKKAPKKRIAAILEPPEDRIEDVGGETVVESEEENSSDNEGLEDTTNSEKLQVELQSLNRKGMQVQLDLKGKESSSSKKPGGRGKGGGSQAADKKGGRGSGSATKRKR | 984 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 55155634 | 55164914 | + | evm.model.ptg000010l.198 | HCH2g1306 | 540531 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH2g1306 | 984 | Gene3D | - | 628 | 739 | - | - | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 202 | 217 | - | - | |
| HCH2g1306 | 984 | ProSiteProfiles | BRCT domain profile. | 218 | 296 | IPR001357 | - | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 154 | 169 | - | - | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 1 | 220 | - | - | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 59 | 122 | - | - | |
| HCH2g1306 | 984 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 92 | 954 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER) | |
| HCH2g1306 | 984 | PIRSF | RFC1 | 1 | 958 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) | |
| HCH2g1306 | 984 | Gene3D | - | 367 | 555 | IPR027417 | - | |
| HCH2g1306 | 984 | Pfam | Replication factor RFC1 C terminal domain | 696 | 858 | IPR013725 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro) | |
| HCH2g1306 | 984 | FunFam | Replication factor C subunit 1 | 628 | 737 | - | - | |
| HCH2g1306 | 984 | Gene3D | - | 556 | 626 | - | - | |
| HCH2g1306 | 984 | SMART | BRCT_7 | 220 | 298 | IPR001357 | - | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 922 | 939 | - | - | |
| HCH2g1306 | 984 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 367 | 616 | IPR027417 | - | |
| HCH2g1306 | 984 | Gene3D | BRCT domain | 195 | 297 | IPR036420 | - | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 318 | 367 | - | - | |
| HCH2g1306 | 984 | CDD | BRCT_RFC1 | 218 | 296 | - | - | |
| HCH2g1306 | 984 | FunFam | Replication factor C subunit 1 | 194 | 297 | - | - | |
| HCH2g1306 | 984 | FunFam | Replication factor C subunit 1 | 556 | 627 | - | - | |
| HCH2g1306 | 984 | CDD | AAA | 408 | 519 | - | - | |
| HCH2g1306 | 984 | FunFam | Replication factor C subunit 1 | 367 | 555 | - | - | |
| HCH2g1306 | 984 | Pfam | BRCA1 C Terminus (BRCT) domain | 220 | 295 | IPR001357 | - | |
| HCH2g1306 | 984 | SUPERFAMILY | BRCT domain | 218 | 297 | IPR036420 | - | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 26 | 58 | - | - | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 302 | 367 | - | - | |
| HCH2g1306 | 984 | CDD | HLD_clamp_RFC | 556 | 614 | IPR047854 | - | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 123 | 138 | - | - | |
| HCH2g1306 | 984 | Pfam | ATPase family associated with various cellular activities (AAA) | 423 | 535 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| HCH2g1306 | 984 | SMART | AAA_5 | 419 | 557 | IPR003593 | GO:0016887(InterPro) | |
| HCH2g1306 | 984 | MobiDBLite | consensus disorder prediction | 889 | 984 | - | - | |
| HCH2g1306 | 984 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 627 | 772 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g1306 | HCH-Chr2:55155634 | HCH7g1411 | HCH-Chr7:46835732 | 1.80E-20 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH2g1306 | K10754 | - | csv:101204361 | 1476.84 |