Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1311 ATGGCTTCTCGAGCTGTTCCTCAACTCAGAGAAGGTGAAGTCAAGCCCAAGATCGTCGCGGTAGAGGGAAGAACGAGGCGGGTTCTTCAGGATATAGGCAATCTAGTGCCTGATCGAGCCTTGGAAGGAAAACCTGGAGCTAATCATCCTCAACCAGCAGAGAAGAATAAGAAAGCAATCACACAAAAAGCAGATGGAGCGGTCCGGAAGGATGGTGCAGTGGCTAAGGCTGCAGTAACTGAGAAGTACATAGCTCAGAAGCCGAAAACTGAAGTGATTGTTCTGAGCTCTGCTGAAAGTGACAACAGATGTATCAATATAAGTGATAGTAAATCAATAAGAAGGAATAGGACTCTGACTTCAACCCTCGGTGCCCGAAGCAAGGCAGCTTGTGGACTCACTAATCCACTGAATTCAGTAGCTAATATTGATGCAGCAGATGCTGATAACGAACTTGCAGTTGTTGAATACATTGATGACATGTACAAGTTTTATAAGCTTGCAGAAGATGAGAGTAGAGTACCGGACTACATAGATTCACAGCCAGATTTAAATACTAAAATGAGGTCTATCCTCATAGATTGGTTGGTAGAAGTTCATTCCAAGTTTGAGCTAATGCCAGAAACCCTCTACCTTACAATAAACATTGTCGATCGCTTCCTCTCAAGGAAGACAGCACCGAGGAGGGAACTTCAGTTGATTGGAATCAGTTCCATGCTCATAGCTTGCAAATACGAAGAGATTTGGGCCCCTGAGGTCAATGATTTTGTGAGTATATCTGATAATTCTTATCATAGAGAACAAATTCTGGTAATGGAGAAGACTATCTTGGGCAGGCTGGAATGGCATTTAACCGTTCCTACGCCTTACGTTTTTCTTGTTCGTTATATTAAGGTTTCTGATCCATCTGATGAGATGGAGAACATGGTATTCTTTCTAGCTGAACTTGGTATTATGAACTATCTCATAGCAGTATCATACTGCCCTTCAATGCTAGCTTCCTCTGCTGTTTACGCTGCACGATGTACTCTCAAGAAGAGCCCCGTCTGGACTGCAACTTTGGAGCACCACACAGGCTATGTTGAAGAAGAGTTGAAGGAATGTGCGAAACTCCTGATTAACTTGCACAGCGGAGCTGCAGATAGTAAGCTCAAGGCCGTGTATCGAAAATATTCAAGTCCAGATCACGGGGTAGTTGCCCTTCTTCCTCCAGCCAAATGCCCAAGTGCATAG 1233 43.96 MASRAVPQLREGEVKPKIVAVEGRTRRVLQDIGNLVPDRALEGKPGANHPQPAEKNKKAITQKADGAVRKDGAVAKAAVTEKYIAQKPKTEVIVLSSAESDNRCINISDSKSIRRNRTLTSTLGARSKAACGLTNPLNSVANIDAADADNELAVVEYIDDMYKFYKLAEDESRVPDYIDSQPDLNTKMRSILIDWLVEVHSKFELMPETLYLTINIVDRFLSRKTAPRRELQLIGISSMLIACKYEEIWAPEVNDFVSISDNSYHREQILVMEKTILGRLEWHLTVPTPYVFLVRYIKVSDPSDEMENMVFFLAELGIMNYLIAVSYCPSMLASSAVYAARCTLKKSPVWTATLEHHTGYVEEELKECAKLLINLHSGAADSKLKAVYRKYSSPDHGVVALLPPAKCPSA 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55191893 55194336 + evm.model.ptg000010l.193 HCH2g1311 540536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1311 410 SUPERFAMILY Cyclin-like 149 284 IPR036915 -
HCH2g1311 410 Gene3D - 160 400 - -
HCH2g1311 410 FunFam G2/mitotic-specific cyclin 173 280 - -
HCH2g1311 410 ProSitePatterns Cyclins signature. 189 220 IPR048258 -
HCH2g1311 410 SUPERFAMILY Cyclin-like 286 406 IPR036915 -
HCH2g1311 410 FunFam G2/mitotic-specific cyclin-1 281 400 - -
HCH2g1311 410 MobiDBLite consensus disorder prediction 36 59 - -
HCH2g1311 410 CDD CYCLIN_AtCycB-like_rpt2 287 404 - -
HCH2g1311 410 Pfam Cyclin, N-terminal domain 160 284 IPR006671 -
HCH2g1311 410 Pfam Cyclin, C-terminal domain 287 404 IPR004367 -
HCH2g1311 410 SMART cyclin_7 291 374 IPR013763 -
HCH2g1311 410 SMART cyclin_7 194 278 IPR013763 -
HCH2g1311 410 Gene3D - 174 285 - -
HCH2g1311 410 CDD CYCLIN_AtCycB-like_rpt1 139 282 - -
HCH2g1311 410 PANTHER CYCLINS 141 393 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH2g1311 410 PIRSF Cyclin_A_B_D_E 2 410 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH2g1311 410 SMART Cyclin_C_2 287 405 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1311 HCH-Chr13:41075728 HCH2g1311 HCH-Chr2:55191893 5.70E-64 dispersed
HCH2g1311 HCH-Chr2:55191893 HCH9g0977 HCH-Chr9:7299250 7.20E-112 dispersed
HCH2g1311 HCH-Chr2:55191893 HCH14g0711 HCH-Chr14:35539224 1.80E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1311 K21777 - csv:101222873 569.311