Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1313 ATGAAATATTGCATGGCTAATGCACCGGCAGCTCTAACAATAATGCTGCTTTTCATGGCAGCTTCTTTTACGGCTGTCTCCGCCGCAGCACCGCCGGTACCGGCCGATAAATCCCAAGTAAACAAATGGTTTTCTGATAATGTGCAACCCTTCTCTGGTAGGAAGGGGGAGCTTGATCCAGTGCTTGTGGCGGCGGAAGAGAAGGCAATGGTTGTGAAGGTAAGGCAGGATGGAAGTGGAAATTTTAAGACAATTGCTGAAGCTGTAAACAGTGTTCCAGCAGGAAACACAAAACGAGTTGTGATATGGATCGGTAAAGGAGTTTATAAGGAGAAGATTAAGATCGAAAGAACAAAACCTTTCATTACCTTCTATGGTTCTCCTGGTGAAATGCCAACCTTGACATTCAATGGTGATGCAAAAACTTATGGCACTGTCGACAGTGGAACATTGATTGTAGAATCTGATTATTTTGTAGCTGCTAATCTCATCATTGTGAATTCATCACCGAGGCCCGACGGGAGGGAAGGAGCACAAGCAGAAGCAGCAAGGATATCCGGGGATAAATCAGTTCTTTATAATTGTAGACTGATTGGCTTTCAAGACACCCTTTGCGACGATGCGGGTTTGCATTTGTTCAAGGATTGTTACATTCAAGGAACTGTTGATTTCATTTTTGGGAGAGGAACATCTCTTTATCTGAACACAGAGTTAAATGTGGTTGGAGACGGGGGATTCACAGTGATCACGGCGCATGCAAGGAAGGAAGAAGCTGACAAGAGTGGATATTCATTTGCTCATTGCACCATAACAGGAACCGGCAGAAACACTTACTTGGGAAGAGCTTGGTTTGCTAGGCCCAGAGTCGTCTTCTCCTACACCCAAATGGCAGATATCATTCATCCCGCCGGCTGGAGCGACAACAAACATCCCGAAAACGATCACTTGTTCTTGTTTGGAGAATACAAGTGTTCGGGACCGGGTTCGAATCCGAGTGGTCGTGCTAAATTCTCTAAGCAGTTAAGCGACATAGAAGTGAAGCCCTACATTAGCCTTGGTTACATCCAGAGTTCAAAGTGGCTGCTTCCACCTCCAAAGCTCTAG 1104 45.38 MKYCMANAPAALTIMLLFMAASFTAVSAAAPPVPADKSQVNKWFSDNVQPFSGRKGELDPVLVAAEEKAMVVKVRQDGSGNFKTIAEAVNSVPAGNTKRVVIWIGKGVYKEKIKIERTKPFITFYGSPGEMPTLTFNGDAKTYGTVDSGTLIVESDYFVAANLIIVNSSPRPDGREGAQAEAARISGDKSVLYNCRLIGFQDTLCDDAGLHLFKDCYIQGTVDFIFGRGTSLYLNTELNVVGDGGFTVITAHARKEEADKSGYSFAHCTITGTGRNTYLGRAWFARPRVVFSYTQMADIIHPAGWSDNKHPENDHLFLFGEYKCSGPGSNPSGRAKFSKQLSDIEVKPYISLGYIQSSKWLLPPPKL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55201583 55203124 + evm.model.ptg000010l.191 HCH2g1313 540538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1313 367 SUPERFAMILY Pectin lyase-like 69 361 IPR011050 -
HCH2g1313 367 Pfam Pectinesterase 72 355 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH2g1313 367 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
HCH2g1313 367 Gene3D - 66 363 IPR012334 -
HCH2g1313 367 FunFam Pectinesterase 67 363 - -
HCH2g1313 367 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 361 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1313 HCH-Chr2:55201583 HCH8g0572 HCH-Chr8:42533040 1.70E-112 dispersed
HCH2g1313 HCH-Chr2:55201583 HCH2g1314 HCH-Chr2:55205902 3.50E-211 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1313 K01051 - csv:101205095 484.567