Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1314 ATGAAATACTGCATTGTTAATGCACCAGCTGCAGCTCTAACAATAATGCTGCTTTTCATGGCAGCTTCTTTTACGGCTGTCTCCGCCGCAGCACCACCGATACCGGCCGATAAATCCCAAGTAAACAAATGGTTTTCTGATAATGTGCAACCCTTCTCTGGTAGGAAGGGGGAGCTTGATCCAGTGCTTGTGGCGGCGGAAGAGAAAGCAATGGTTGTGAAGGTAAGGCAGGATGGAAGTGGAAATTTTAAGACAATTGCTGAAGCTGTAAATAGTGTTCCAGCAGGAAACACAAAACGAGTTGTGATATGGATCGGTAAAGGAGTTTATAAGGAGAAGATTAAGATCGAAAGAACAAAACCTTTCATTACCTTCTATGGTTCTCCTGGTGAAATGCCAACCTTGACATTCAATGGTGATGCAAAAACTTATGGCACTGTCGACAGTGGAACATTGATTGTAGAATCTGATTATTTTGTAGCTGCTAATCTCATCATTGTGAATTCATCACCGAGGCCCGACGGGAGGGAAGGAGCACAAGCAGAAGCAGCAAGGATATCCGGGGATAAATCAGTTCTTTATAATTGTAGACTGATTGGCTTTCAAGACACCCTTTGCGACGATGCGGGTTTGCATTTGTTCAAGGATTGTTACATTCAAGGAACTGTCGATTTCGTTTTTGGGAGAGGAACATCTCTTTATCTGAACACAGAGTTAAATGTGGTTGGAGATGGGGGATTCACAGTGATCACAGCACATGCAAGGAAGGAAGAAGCTGACAAGAGTGGATATTCATTTGCTCATTGCACCATTACTGGAACCGGTAGAAAAACTTACTTGGGAAGAGCTTGGTTTGCTAGGCCCAGAGTCGTCTTCTCCTACACCCAAATGGCAGATATCATTCATCCCGCCGGCTGGAGCGACAACAAGCATCCCGAAAACGCTCACCTTTTCTTGTTTGGAGAATACAAGTGTTCGGGACCGGGTTCGAGTCCGAGTGGTCGTGCTAAATTCTCTAAGCAGTTAAGCGACATAGAAGTGAAGCCATACATTAGCCTTGGTTACATCCAGAGTTCAAAGTGGCTGCTTCCACCTCCAAAGTTCTAG 1107 44.72 MKYCIVNAPAAALTIMLLFMAASFTAVSAAAPPIPADKSQVNKWFSDNVQPFSGRKGELDPVLVAAEEKAMVVKVRQDGSGNFKTIAEAVNSVPAGNTKRVVIWIGKGVYKEKIKIERTKPFITFYGSPGEMPTLTFNGDAKTYGTVDSGTLIVESDYFVAANLIIVNSSPRPDGREGAQAEAARISGDKSVLYNCRLIGFQDTLCDDAGLHLFKDCYIQGTVDFVFGRGTSLYLNTELNVVGDGGFTVITAHARKEEADKSGYSFAHCTITGTGRKTYLGRAWFARPRVVFSYTQMADIIHPAGWSDNKHPENAHLFLFGEYKCSGPGSSPSGRAKFSKQLSDIEVKPYISLGYIQSSKWLLPPPKF 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55205902 55207629 + evm.model.ptg000010l.190 HCH2g1314 540539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1314 368 Pfam Pectinesterase 73 356 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH2g1314 368 Gene3D - 67 364 IPR012334 -
HCH2g1314 368 SUPERFAMILY Pectin lyase-like 70 362 IPR011050 -
HCH2g1314 368 FunFam Pectinesterase 68 364 - -
HCH2g1314 368 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
HCH2g1314 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 16 362 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1314 HCH-Chr2:55205902 HCH8g0572 HCH-Chr8:42533040 3.80E-112 dispersed
HCH2g1313 HCH-Chr2:55201583 HCH2g1314 HCH-Chr2:55205902 3.50E-211 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1314 K01051 - csv:101205095 489.96