Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1317 ATGGAACAAAGAAAATACATACACAGACACGATGGCTTTCTTCATCTTCCATCCGTTTTCTTTGTCTTATTTTTGTCGGTTTCAGTATCTGTCGGTGTCGTACAAGGTTACCAAAACTACACGGTCGGAGATTCCTTGGGTTGGTTTGATAACTTGGAGAAGCCCACCGTTGATTACCAGCAATGGATCTCCGGCAAGAATTTCACCCTCGGTGATTTCCTCATTTTTAACACAGACAACAATCACTCGGTCGTCCAAACGTACAATTTCACCACATACAAGCTCTGCGACTACGACGACGCCTCCGAAAAAGACACGACGGAATGGTCTGCCGCCGACCCATCGGCAATTACTCCACACCCCGTCACAGTGCCCGTCCCATTAGTGAAAGAAGGGATGAACTATTTCTTCTCCGGCCATTACGACGGCGAGCAGTGCCAAAACGGGCAACATTTCAAAATAAACGTCACTCACGGAGAGGGTTTGCCCAAGAGTCTTCGAGGCGATTCTTCCGTTGAATCTCCGGGTCCGATAAGCCCCGATTCCGGCGACGACAGCGACTACGTACCAGATACCATTATTCCTTCCAGCTTCGACAATCCTAAAGATGACAAGGCAGATGATGATAAGAAACCTTCAGGCTCGGCTTCACTCTCTGATCTCCACATGAAATATTTAAACGTGATTTTCTTGCTATTCATATGCATTTCAGGCATCTTTGATTGA 726 46.69 MEQRKYIHRHDGFLHLPSVFFVLFLSVSVSVGVVQGYQNYTVGDSLGWFDNLEKPTVDYQQWISGKNFTLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDDASEKDTTEWSAADPSAITPHPVTVPVPLVKEGMNYFFSGHYDGEQCQNGQHFKINVTHGEGLPKSLRGDSSVESPGPISPDSGDDSDYVPDTIIPSSFDNPKDDKADDDKKPSGSASLSDLHMKYLNVIFLLFICISGIFD 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55216880 55219223 + evm.model.ptg000010l.187 HCH2g1317 540542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1317 241 FunFam Early nodulin-like protein 18 37 159 - -
HCH2g1317 241 PANTHER BLUE COPPER PROTEIN 24 171 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
HCH2g1317 241 Pfam Plastocyanin-like domain 48 150 IPR003245 GO:0009055(InterPro)
HCH2g1317 241 SUPERFAMILY Cupredoxins 39 156 IPR008972 -
HCH2g1317 241 ProSiteProfiles Phytocyanin domain profile. 38 158 IPR003245 GO:0009055(InterPro)
HCH2g1317 241 MobiDBLite consensus disorder prediction 163 215 - -
HCH2g1317 241 Gene3D - 37 161 IPR008972 -
HCH2g1317 241 MobiDBLite consensus disorder prediction 198 215 - -
HCH2g1317 241 CDD Phytocyanin 39 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1317 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1205 HCH-Chr13:39373880 HCH2g1317 HCH-Chr2:55216880 1.20E-33 dispersed
HCH13g1206 HCH-Chr13:39390845 HCH2g1317 HCH-Chr2:55216880 1.20E-33 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0836 . 9 151 Phytocyanin Superfamily AT5G53870 53.1 3.0e-37 152.9
HCH3g0152 . 5 141 Phytocyanin Superfamily AT1G48940 57.6 1.4e-40 162.9
HCH12g1062 . 15 130 Phytocyanin Superfamily AT4G27520 61.2 3.8e-37 152.5
HCH9g0266 . 18 132 Phytocyanin Superfamily AT3G01070 63.6 2.4e-37 152.1
HCH4g0475 . 1 171 Phytocyanin Superfamily AT2G25060 55.5 1.2e-47 186.4
HCH4g0475 . 8 140 Phytocyanin Superfamily AT4G30590 50.4 1.0e-36 150.2
HCH9g0266 . 34 181 Phytocyanin Superfamily AT5G15350 54.7 1.1e-45 179.9
HCH4g0475 . 4 170 Phytocyanin Superfamily AT4G31840 53.8 3.0e-46 181.8
HCH3g0152 . 1 133 Phytocyanin Superfamily AT3G18590 57.0 5.7e-40 161.0
HCH4g1422 . 30 132 Phytocyanin Superfamily AT1G79800 66.0 1.4e-38 156.4
HCH2g0836 . 9 151 Phytocyanin Superfamily AT5G53870 53.1 3.0e-37 152.9
HCH12g1062 . 15 130 Phytocyanin Superfamily AT4G27520 61.2 3.8e-37 152.5
HCH2g0836 . 12 155 Phytocyanin Superfamily AT4G28365 52.8 2.8e-37 152.1
HCH3g0152 . 1 133 Phytocyanin Superfamily AT3G18590 57.0 5.7e-40 161.0
HCH3g0152 . 5 141 Phytocyanin Superfamily AT1G48940 57.6 1.4e-40 162.9
HCH4g1422 . 30 132 Phytocyanin Superfamily AT1G79800 66.0 1.4e-38 156.4
HCH6g1178 . 17 174 Phytocyanin Superfamily AT1G64640 50.9 6.0e-37 151.0
HCH4g0475 . 8 140 Phytocyanin Superfamily AT4G30590 50.4 1.0e-36 150.2
HCH4g0475 . 10 170 Phytocyanin Superfamily AT5G25090 53.8 1.4e-41 166.4
HCH4g0475 . 1 171 Phytocyanin Superfamily AT2G25060 55.5 1.2e-47 186.4
HCH4g0475 . 4 170 Phytocyanin Superfamily AT4G31840 53.8 3.0e-46 181.8
HCH9g0266 . 18 132 Phytocyanin Superfamily AT3G01070 63.6 2.4e-37 152.1
HCH9g0266 . 34 181 Phytocyanin Superfamily AT5G15350 54.7 1.1e-45 179.9
HCH2g1317 . 35 219 Phytocyanin Superfamily AT1G08500 60.8 1.1e-61 233.4
HCH8g0501 . 27 153 Phytocyanin Superfamily AT2G27035 55.1 6.1e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26