Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1317 ATGGAACAAAGAAAATACATACACAGACACGATGGCTTTCTTCATCTTCCATCCGTTTTCTTTGTCTTATTTTTGTCGGTTTCAGTATCTGTCGGTGTCGTACAAGGTTACCAAAACTACACGGTCGGAGATTCCTTGGGTTGGTTTGATAACTTGGAGAAGCCCACCGTTGATTACCAGCAATGGATCTCCGGCAAGAATTTCACCCTCGGTGATTTCCTCATTTTTAACACAGACAACAATCACTCGGTCGTCCAAACGTACAATTTCACCACATACAAGCTCTGCGACTACGACGACGCCTCCGAAAAAGACACGACGGAATGGTCTGCCGCCGACCCATCGGCAATTACTCCACACCCCGTCACAGTGCCCGTCCCATTAGTGAAAGAAGGGATGAACTATTTCTTCTCCGGCCATTACGACGGCGAGCAGTGCCAAAACGGGCAACATTTCAAAATAAACGTCACTCACGGAGAGGGTTTGCCCAAGAGTCTTCGAGGCGATTCTTCCGTTGAATCTCCGGGTCCGATAAGCCCCGATTCCGGCGACGACAGCGACTACGTACCAGATACCATTATTCCTTCCAGCTTCGACAATCCTAAAGATGACAAGGCAGATGATGATAAGAAACCTTCAGGCTCGGCTTCACTCTCTGATCTCCACATGAAATATTTAAACGTGATTTTCTTGCTATTCATATGCATTTCAGGCATCTTTGATTGA 726 46.69 MEQRKYIHRHDGFLHLPSVFFVLFLSVSVSVGVVQGYQNYTVGDSLGWFDNLEKPTVDYQQWISGKNFTLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDDASEKDTTEWSAADPSAITPHPVTVPVPLVKEGMNYFFSGHYDGEQCQNGQHFKINVTHGEGLPKSLRGDSSVESPGPISPDSGDDSDYVPDTIIPSSFDNPKDDKADDDKKPSGSASLSDLHMKYLNVIFLLFICISGIFD 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55216880 55219223 + evm.model.ptg000010l.187 HCH2g1317 540542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1317 241 FunFam Early nodulin-like protein 18 37 159 - -
HCH2g1317 241 PANTHER BLUE COPPER PROTEIN 24 171 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
HCH2g1317 241 Pfam Plastocyanin-like domain 48 150 IPR003245 GO:0009055(InterPro)
HCH2g1317 241 SUPERFAMILY Cupredoxins 39 156 IPR008972 -
HCH2g1317 241 ProSiteProfiles Phytocyanin domain profile. 38 158 IPR003245 GO:0009055(InterPro)
HCH2g1317 241 MobiDBLite consensus disorder prediction 163 215 - -
HCH2g1317 241 Gene3D - 37 161 IPR008972 -
HCH2g1317 241 MobiDBLite consensus disorder prediction 198 215 - -
HCH2g1317 241 CDD Phytocyanin 39 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1205 HCH-Chr13:39373880 HCH2g1317 HCH-Chr2:55216880 1.20E-33 dispersed
HCH13g1206 HCH-Chr13:39390845 HCH2g1317 HCH-Chr2:55216880 1.20E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1317 - - - 0.0