Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1368 ATGCAGTCGAAGCCAAAAAGTGTGAATCAACTTGAATCTGAACCACCTATGCAGCAGGGTGGTAGTTATTCTGAGCCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCCCCTCCAGCAGTGGGAGGGAATGTGTCCAATTCAACATCACTGGAAGGCACTAATGGTGCTTCAGAATCTAATGATGGTCAATCAATGTCAAACGATGATTTGAATGAGGAAGATGAAGATGATGATACTGCAAAAGACTCGCAAGCTGCAAATTATGGGCAAGAACAGCACAACAGTCAGCATGCTGTTTCCACTGCTCCTACAATGCATGGTGGATGTATCACACAACCTCCCCAGCTTGAACTTGTTGGCCACTCTATTGCTTGTGCATCAAATCCATATCAAGATCCTTATTATGCAGGAATGATGGCTGCTTATGGGCATCAACCTTTGGGTTATTCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCAGTTTTTGTGAATGCTAAACAATATCAAGGGATTTTGAGGCGAAGACAAGCACGCGCTAAAGCAGAGGTTGAAAACAAACTGATCAAAATCAGAAAGCCTTATCTTCACGAATCTCGTCACCAGCATGCCATGAGAAGAGCAAGAGGTACTGGAGGACGTTTTGCCAAGAAAAATGATGCTAAATCTTCGAGCTCAACCGCGAAGAACAAGGGATCTGGTTCTGGTCAAGCTATTTCATCACAGTCTGCTAGTTCATCTGGTTCCGAACCCGTGCCTCGTGTCTCGGCTGAAACCTGGAATTCCTCGAATGGTCAGCAAGAAGCAAGGACCCAATTGCATGAGACATTTGAAGCTCAAGGCTATGTAAAGGGAGGCGGCCATCTTCAAAATTACAGTAGCTTCCAAGCTTCAACCTTTGCTTTACGCTCTGGTGAAAGAGGTGAAGATGGAGACTGTTCAGGACAGCAGCGTGGAAGTATCTCAGAAAACCAGGCAGCGCATAGGCGTCTTGCCATCAAGTGA 1035 45.99 MQSKPKSVNQLESEPPMQQGGSYSEPWWRSIGYNPISPPAVGGNVSNSTSLEGTNGASESNDGQSMSNDDLNEEDEDDDTAKDSQAANYGQEQHNSQHAVSTAPTMHGGCITQPPQLELVGHSIACASNPYQDPYYAGMMAAYGHQPLGYSPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKIRKPYLHESRHQHAMRRARGTGGRFAKKNDAKSSSSTAKNKGSGSGQAISSQSASSSGSEPVPRVSAETWNSSNGQQEARTQLHETFEAQGYVKGGGHLQNYSSFQASTFALRSGERGEDGDCSGQQRGSISENQAAHRRLAIK 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55522863 55525632 - evm.model.ptg000010l.136 HCH2g1368 540593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1368 344 MobiDBLite consensus disorder prediction 1 107 - -
HCH2g1368 344 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1368 344 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1368 344 SMART cbf3 167 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1368 344 MobiDBLite consensus disorder prediction 313 344 - -
HCH2g1368 344 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1368 344 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
HCH2g1368 344 MobiDBLite consensus disorder prediction 204 279 - -
HCH2g1368 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 18 285 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH2g1368 344 MobiDBLite consensus disorder prediction 228 279 - -
HCH2g1368 344 MobiDBLite consensus disorder prediction 1 25 - -
HCH2g1368 344 MobiDBLite consensus disorder prediction 84 107 - -
HCH2g1368 344 MobiDBLite consensus disorder prediction 206 222 - -
HCH2g1368 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1368 344 Gene3D - 168 230 - -
HCH2g1368 344 MobiDBLite consensus disorder prediction 40 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1368 K08064 - - csv:101212961 537.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1124 HCH-Chr14:38158728 HCH2g1368 HCH-Chr2:55522863 5.00E-28 transposed
HCH2g1368 HCH-Chr2:55522863 HCH4g1200 HCH-Chr4:8039548 8.00E-32 wgd
HCH2g1368 HCH-Chr2:55522863 HCH8g0446 HCH-Chr8:39553871 3.40E-83 wgd
HCH2g1368 HCH-Chr2:55522863 HCH9g1106 HCH-Chr9:13339242 1.40E-31 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g1368 . 1 232 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.5 1.2e-57 220.3
HCH8g0446 . 1 236 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.5 1.9e-52 203.0
HCH8g0446 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.5 6.0e-47 184.9
HCH14g1124 . 37 243 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.1 2.8e-50 195.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33260 PF02045 CBFB_NFYA 5.60E-26 No_clan HCH TF