Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1368 ATGCAGTCGAAGCCAAAAAGTGTGAATCAACTTGAATCTGAACCACCTATGCAGCAGGGTGGTAGTTATTCTGAGCCTTGGTGGCGTAGTATTGGGTACAATCCTATCTCCCCTCCAGCAGTGGGAGGGAATGTGTCCAATTCAACATCACTGGAAGGCACTAATGGTGCTTCAGAATCTAATGATGGTCAATCAATGTCAAACGATGATTTGAATGAGGAAGATGAAGATGATGATACTGCAAAAGACTCGCAAGCTGCAAATTATGGGCAAGAACAGCACAACAGTCAGCATGCTGTTTCCACTGCTCCTACAATGCATGGTGGATGTATCACACAACCTCCCCAGCTTGAACTTGTTGGCCACTCTATTGCTTGTGCATCAAATCCATATCAAGATCCTTATTATGCAGGAATGATGGCTGCTTATGGGCATCAACCTTTGGGTTATTCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCAGTTTTTGTGAATGCTAAACAATATCAAGGGATTTTGAGGCGAAGACAAGCACGCGCTAAAGCAGAGGTTGAAAACAAACTGATCAAAATCAGAAAGCCTTATCTTCACGAATCTCGTCACCAGCATGCCATGAGAAGAGCAAGAGGTACTGGAGGACGTTTTGCCAAGAAAAATGATGCTAAATCTTCGAGCTCAACCGCGAAGAACAAGGGATCTGGTTCTGGTCAAGCTATTTCATCACAGTCTGCTAGTTCATCTGGTTCCGAACCCGTGCCTCGTGTCTCGGCTGAAACCTGGAATTCCTCGAATGGTCAGCAAGAAGCAAGGACCCAATTGCATGAGACATTTGAAGCTCAAGGCTATGTAAAGGGAGGCGGCCATCTTCAAAATTACAGTAGCTTCCAAGCTTCAACCTTTGCTTTACGCTCTGGTGAAAGAGGTGAAGATGGAGACTGTTCAGGACAGCAGCGTGGAAGTATCTCAGAAAACCAGGCAGCGCATAGGCGTCTTGCCATCAAGTGA 1035 45.99 MQSKPKSVNQLESEPPMQQGGSYSEPWWRSIGYNPISPPAVGGNVSNSTSLEGTNGASESNDGQSMSNDDLNEEDEDDDTAKDSQAANYGQEQHNSQHAVSTAPTMHGGCITQPPQLELVGHSIACASNPYQDPYYAGMMAAYGHQPLGYSPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKIRKPYLHESRHQHAMRRARGTGGRFAKKNDAKSSSSTAKNKGSGSGQAISSQSASSSGSEPVPRVSAETWNSSNGQQEARTQLHETFEAQGYVKGGGHLQNYSSFQASTFALRSGERGEDGDCSGQQRGSISENQAAHRRLAIK 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55522863 55525632 - evm.model.ptg000010l.136 HCH2g1368 540593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1368 344 MobiDBLite consensus disorder prediction 1 107 - -
HCH2g1368 344 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1368 344 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1368 344 SMART cbf3 167 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1368 344 MobiDBLite consensus disorder prediction 313 344 - -
HCH2g1368 344 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1368 344 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
HCH2g1368 344 MobiDBLite consensus disorder prediction 204 279 - -
HCH2g1368 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 18 285 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH2g1368 344 MobiDBLite consensus disorder prediction 228 279 - -
HCH2g1368 344 MobiDBLite consensus disorder prediction 1 25 - -
HCH2g1368 344 MobiDBLite consensus disorder prediction 84 107 - -
HCH2g1368 344 MobiDBLite consensus disorder prediction 206 222 - -
HCH2g1368 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1368 344 Gene3D - 168 230 - -
HCH2g1368 344 MobiDBLite consensus disorder prediction 40 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1124 HCH-Chr14:38158728 HCH2g1368 HCH-Chr2:55522863 5.00E-28 transposed
HCH2g1368 HCH-Chr2:55522863 HCH4g1200 HCH-Chr4:8039548 8.00E-32 wgd
HCH2g1368 HCH-Chr2:55522863 HCH8g0446 HCH-Chr8:39553871 3.40E-83 wgd
HCH2g1368 HCH-Chr2:55522863 HCH9g1106 HCH-Chr9:13339242 1.40E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33260 PF02045 CBFB_NFYA 5.60E-26 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1368 K08064 - csv:101212961 537.724