Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1385 ATGGAACCTAATCTCGATGATCTTAAGATGCCTCTATTTGGACCTGAGCACAAGAAGGAGGCGGAGATAACGGAAGCTGAGAGCTCCAGCCAAAGAGTTTCAAGTGTACTGGAGGAAAGTGAAACCATAGAAGACAGAGGTTTTCCTGTTGATAAATTTCTGGAACAAGAAATCGCAATATGCCGTCTAAGAATTAAAGCAATGACATGCACATCCTGTGCGGAATCTATTGAACGTGCCCTTCTGATGGTTGATGGAGTGAAAAAAGCAGTGGTTGGTCTGGCAATAGAAGAAGCAAGAGTCCACTTTGATCCAAACATGATCAATGAAAGCCAAATTCTTGAAGCAATTGAAGATGCTGGCTTTGGAGCTGAGCTCATTATCTCTTCAAATGAAGTAGATAAAGTGCATCTAAAACTTGAAGGAGTAGGTCCTGAAGATGTGCCCGCTATAAAATCATCTCTTGAGCTTGCTGTTGGCGTGAATTCTGTTGACATGGACTTGATTGGACAGAAGGTAACCATCAGTTATGACCCAGATCTAACTGGTCCAAGGTCTCTTGTCCACTGCATCAGAGAAGCAGGCCAAGGCTTCAAGATTTATAGTGCTAGCTTGTATGTACCTCCAAGAAGAAGAGATATAGAGCAGCTTGAAGAAATTAATACTTGTAGAAACCTATTCTTGTTTAGCTGCCTATTCTCACTTCCAATATTTCTCTTTGCAATGGTGCTTCCTATGATTCCTCCTTATGGGAACTGGTTGGATGAGGTGGTTCACAATACGCTTACCGTTGGAATGCTTTTTAGATGGATCCTTTGCACACCAGTCCAGTTTATTGTTGGCCGAAGGTTTTATGTAGGTTCATACCATGCATTAAGGCGAAAATCTGCAAATATGGATGTTCTGGTTGCTTTAGGCACTAATGCTGCTTACTTTTACTCCGTATTCATAGTTATTAAAGCATCCACTTCCAATTCTTTTAAAGGGCAAGATTTATTTGAAACTAGCTCCATGTTGATATCCTTCATTCTACTTGGAAAATATCTGGAGGTCAAGGCTAAAGGGAAAACATCAGATGCTTTAGCAAAGCTTGCTGATCTAGCTCCTGATACAGCTCATGTCGTGGTGTTGGATGTTGATGGAAATGTTCTCTCCGAGTTCGAGATCGATACTCAGATGATACAGAGAAATGATATAATTAAGATTTTGCCTGGAGCAAGAGTTCCTGTTGATGGAATTGTTATTAACGGTCAAAGCTATATTAATGAGAGTATGATCACCGGAGAGCCAAATCCCGTAGCTAAAATGCCTGGTCACAAGGTTATAGGTGGAACTATCAATGAACAGGGATGTTTACTTGTCAAGGCCACTCATGTTGGGTCTGATACTGCACTTTCCCAAATTGTTCAACTTGTGGAATCAGCTCAGCTTGTGCGAGCACCAGCTCAGAAATTAGCGGATCAGATATCAAAAATTTTTGTTCCTACCGTTGTTGTTGCAGCATTCATGACATGGCTTGGATGGTTTATCTCTGGAAAAGCTGGTTTATACCCAAAGCAATGGATACCAAAAGCCATGGATGAATTTGAGTTTGCACTGCAGTTTAGTATTTCAGTTCTGGTGATCGCGTGCCCATGTGCCCTTGGTTTAGCAACACCGACAGCAGTCATGGTTGCCTCAGGAAAGGGTGCTTCTCAAGGTGTACTCATCAAGGGTGGAAATGCACTTGAAAAGGCACACAAGGTGAAAACTGTTGTTTTCGATAAGACAGGGACACTTACAGTTGGCAAGCCCGAGGTAGTTGGTGTTGTGCTCTTTTCCAGATTTTCAATGGAGGTGGTCTGTGATGTAACTATAGCCATAGAGTCCAACAGCGAACACCCTTTAGCAAAATCTATAGTGGAGCATGCAAAGAAAATGAGACAGAAGTTTGGTTCCCATGCTGAACGTCCAAATGACTTGGATTCCTTTGAGGTATTCCTCGGATTGGGAGTTGGAGGAAAAGTTGGTAAAAAGTCAGTTTTAGTGGGGAGCAGAAAACTCATGAATACTCGTAACATTCCAGTAGGTCCTGAAGTTGACCGTTATATTTCAGAAACTGAGCAGCGTGCTCGAACATGTATCTTAGTGGCTATTAATAGCAAAGTAGCTGGAGGTTTTGCTGTTACCGATCCACTGAAGCCTGGGGCTCGAAATGTCATATCACGTCTCCGTTCAATGGGTATCTCAAGCATACTGATAAGTGGTGATAACTGGGCCACAGCATCTGCCATCGCAAAGGACGCAGGCATTGATGAGATCTTTGCTGAGATAGATCCAATTGGAAAAGCTAATAAGATTAAAGCCTTACAGATGAACGGGATTCCCGTGGCAATGGTGGGAGATGGAATAAATGATTCACCCGCTCTAGCTGCAGCTGATGTTGGAATCGCAATTGGTGCAGGAACAAATGTTGCTATAGAAGCCGCTGACATAGTTCTCATCCGAAACCATTTGGAAGATGTAGTTACAGCTATAGATCTCTCTCGAAAAACCTTTTACCTTATAACACTGAATTACATCTGGGCCCTTGGCTATAATATCCTCGGCGTGCCAATTGCTGCTGGAGTCTTATATCCCTTCACTGAAATCAGGGTGCCACCTTGGCTTGCTGGTGCCTGCATGGCTGCTTCATCCGTTAGCGTCGTATGTTCTTCTCTCTTATTGCAATGCTATAGAAGGCCTTTAAAAATTCATTCCCCTTGA 2745 42.7 MEPNLDDLKMPLFGPEHKKEAEITEAESSSQRVSSVLEESETIEDRGFPVDKFLEQEIAICRLRIKAMTCTSCAESIERALLMVDGVKKAVVGLAIEEARVHFDPNMINESQILEAIEDAGFGAELIISSNEVDKVHLKLEGVGPEDVPAIKSSLELAVGVNSVDMDLIGQKVTISYDPDLTGPRSLVHCIREAGQGFKIYSASLYVPPRRRDIEQLEEINTCRNLFLFSCLFSLPIFLFAMVLPMIPPYGNWLDEVVHNTLTVGMLFRWILCTPVQFIVGRRFYVGSYHALRRKSANMDVLVALGTNAAYFYSVFIVIKASTSNSFKGQDLFETSSMLISFILLGKYLEVKAKGKTSDALAKLADLAPDTAHVVVLDVDGNVLSEFEIDTQMIQRNDIIKILPGARVPVDGIVINGQSYINESMITGEPNPVAKMPGHKVIGGTINEQGCLLVKATHVGSDTALSQIVQLVESAQLVRAPAQKLADQISKIFVPTVVVAAFMTWLGWFISGKAGLYPKQWIPKAMDEFEFALQFSISVLVIACPCALGLATPTAVMVASGKGASQGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVGVVLFSRFSMEVVCDVTIAIESNSEHPLAKSIVEHAKKMRQKFGSHAERPNDLDSFEVFLGLGVGGKVGKKSVLVGSRKLMNTRNIPVGPEVDRYISETEQRARTCILVAINSKVAGGFAVTDPLKPGARNVISRLRSMGISSILISGDNWATASAIAKDAGIDEIFAEIDPIGKANKIKALQMNGIPVAMVGDGINDSPALAAADVGIAIGAGTNVAIEAADIVLIRNHLEDVVTAIDLSRKTFYLITLNYIWALGYNILGVPIAAGVLYPFTEIRVPPWLAGACMAASSVSVVCSSLLLQCYRRPLKIHSP 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55631797 55638486 - evm.model.ptg000010l.119 HCH2g1385 540610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1385 914 FunFam Copper-transporting ATPase HMA5 58 129 - -
HCH2g1385 914 Gene3D - 60 130 - -
HCH2g1385 914 MobiDBLite consensus disorder prediction 1 38 - -
HCH2g1385 914 SFLD Haloacid Dehalogenase 568 845 - -
HCH2g1385 914 ProSiteProfiles Heavy-metal-associated domain profile. 129 199 IPR006121 GO:0046872(InterPro)
HCH2g1385 914 Gene3D - 577 843 IPR023214 -
HCH2g1385 914 ProSiteProfiles Heavy-metal-associated domain profile. 59 125 IPR006121 GO:0046872(InterPro)
HCH2g1385 914 Pfam Heavy-metal-associated domain 63 122 IPR006121 GO:0046872(InterPro)
HCH2g1385 914 Gene3D - 354 476 - -
HCH2g1385 914 SUPERFAMILY Calcium ATPase, transduction domain A 386 472 IPR008250 -
HCH2g1385 914 CDD HMA 63 125 IPR006121 GO:0046872(InterPro)
HCH2g1385 914 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 38 910 - -
HCH2g1385 914 CDD P-type_ATPase_Cu-like 227 889 - -
HCH2g1385 914 ProSitePatterns Heavy-metal-associated domain. 65 94 IPR017969 GO:0046872(InterPro)
HCH2g1385 914 SUPERFAMILY HMA, heavy metal-associated domain 135 202 IPR036163 GO:0046872(InterPro)
HCH2g1385 914 ProSitePatterns E1-E2 ATPases phosphorylation site. 588 594 IPR018303 -
HCH2g1385 914 Pfam haloacid dehalogenase-like hydrolase 582 807 - -
HCH2g1385 914 NCBIfam heavy metal translocating P-type ATPase 299 902 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
HCH2g1385 914 SUPERFAMILY HAD-like 584 899 IPR036412 -
HCH2g1385 914 FunFam Probable copper-transporting ATPase HMA5 710 850 - -
HCH2g1385 914 NCBIfam HAD-IC family P-type ATPase 339 870 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH2g1385 914 PRINTS Copper-transporting ATPase 1 signature 60 85 - -
HCH2g1385 914 PRINTS Copper-transporting ATPase 1 signature 227 248 - -
HCH2g1385 914 PRINTS Copper-transporting ATPase 1 signature 282 307 - -
HCH2g1385 914 PRINTS Copper-transporting ATPase 1 signature 86 109 - -
HCH2g1385 914 PRINTS Copper-transporting ATPase 1 signature 262 282 - -
HCH2g1385 914 PRINTS Copper-transporting ATPase 1 signature 115 135 - -
HCH2g1385 914 FunFam Copper-transporting ATPase 1, putative 354 476 - -
HCH2g1385 914 MobiDBLite consensus disorder prediction 11 26 - -
HCH2g1385 914 Pfam E1-E2 ATPase 367 565 - -
HCH2g1385 914 CDD HMA 150 195 IPR006121 GO:0046872(InterPro)
HCH2g1385 914 PRINTS P-type cation-transporting ATPase superfamily signature 718 729 - -
HCH2g1385 914 PRINTS P-type cation-transporting ATPase superfamily signature 793 812 - -
HCH2g1385 914 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
HCH2g1385 914 PRINTS P-type cation-transporting ATPase superfamily signature 740 750 - -
HCH2g1385 914 PRINTS P-type cation-transporting ATPase superfamily signature 586 600 - -
HCH2g1385 914 PRINTS P-type cation-transporting ATPase superfamily signature 816 828 - -
HCH2g1385 914 Gene3D - 597 726 IPR023299 GO:0000166(InterPro)
HCH2g1385 914 SFLD p-type atpase 568 845 IPR044492 -
HCH2g1385 914 Gene3D - 136 203 - -
HCH2g1385 914 SUPERFAMILY HMA, heavy metal-associated domain 56 126 IPR036163 GO:0046872(InterPro)
HCH2g1385 914 SUPERFAMILY Calcium ATPase, transmembrane domain M 335 578 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1385 HCH-Chr2:55631797 HCH9g0913 HCH-Chr9:6734602 2.60E-271 dispersed
HCH2g1385 HCH-Chr2:55631797 HCH8g1049 HCH-Chr8:46443646 1.00E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1385 K17686 - rcu:8274424 1232.62