Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1387 ATGTCTGATCCATACTCCATGAATGGTTCTTTTGCCTTATACCCTCTTCACCAATACCTCTCTTCTTCTTCATCTTCTTCTTCTTCTTTTACTCCATCTTCTTATTCTTCCTTCGATCACTTATACCCTTATTCTTGCTCAAACAATAACCTAAAAAACATCTCCTTCACAACCCATGAATTATCATCAGCTCCTTCTCCTCAAGCCCTTCCTCTCCTTAGTTTAAGCCCTGCAAGATATCATGAAGAACAAGATCTATCTTCCTCCTCAGGAGCTATGGAAGTTTTGAACAATAAGAAGAAACATGACAACTTTTGTAGCTCTTGTGATGATGATACTGTTACTGTTGCTTTACATTTAGGGCTTCCTAATCCACCTTCTTCTGATCTGATCTTAAGGCTTTCTTCCACTGAAATTTCAGATAAAGAAGAAGAAAATCACATCCCTCTTGTTTCCAATTACTCTTCCACAAGTGGACTTAACAAGGGTCAGTATTGGATTCCAACTCCTGCTCAGATTCTTATTGGTCCAACTCAGTTTTCATGCCCTCTTTGCTTCAAGACTTTCAATAGATACAACAACATGCAGATGCACATGTGGGGACATGGATCTCAGTATAGAAAAGGGCCTCAGTCACTGAGAGGAACACAACCAACAGCTATGCTTAGACTTCCTTGCTATTGCTGTGCTCCAGGTTGCAGGAACAACATTGACCATCCAAGATCAAAGCCACTCAAGGACTTTAGAACCCTCCAAACACATTACAAGAGAAAGCACGGAATCAAGCCTTTTACGTGTCGAAAATGTGGCAAAGCCTTTGCCGTAAGAGGCGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTCAAACATAAGAGGTCTCTTAAAGATCATATCAGGGCCTTTGGACATGGTCATGCCGCTTATGGTATCGACTCTTTCGACGAAGATGATGAACCGGCCTCTGAAATCGAACACGATTATGATTTCTCTCAGTAA 1026 41.42 MSDPYSMNGSFALYPLHQYLSSSSSSSSSFTPSSYSSFDHLYPYSCSNNNLKNISFTTHELSSAPSPQALPLLSLSPARYHEEQDLSSSSGAMEVLNNKKKHDNFCSSCDDDTVTVALHLGLPNPPSSDLILRLSSTEISDKEEENHIPLVSNYSSTSGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIRAFGHGHAAYGIDSFDEDDEPASEIEHDYDFSQ 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55650887 55653414 + evm.model.ptg000010l.117 HCH2g1387 540612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1387 341 Pfam Zinc finger, C2H2 type 180 199 IPR013087 -
HCH2g1387 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 291 IPR013087 -
HCH2g1387 341 SUPERFAMILY beta-beta-alpha zinc fingers 245 284 IPR036236 -
HCH2g1387 341 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
HCH2g1387 341 Gene3D Classic Zinc Finger 179 202 - -
HCH2g1387 341 SMART c2h2final6 180 202 IPR013087 -
HCH2g1387 341 SMART c2h2final6 290 313 IPR013087 -
HCH2g1387 341 SMART c2h2final6 264 284 IPR013087 -
HCH2g1387 341 FunFam Zinc finger protein WIP2 233 315 - -
HCH2g1387 341 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 263 287 - -
HCH2g1387 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
HCH2g1387 341 Gene3D Classic Zinc Finger 262 311 - -
HCH2g1387 341 PANTHER ZINC FINGER PROTEIN WIP2 32 336 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0605 HCH-Chr11:14092067 HCH2g1387 HCH-Chr2:55650887 1.10E-111 dispersed
HCH10g1249 HCH-Chr10:44385413 HCH2g1387 HCH-Chr2:55650887 3.50E-89 transposed
HCH3g1180 HCH-Chr3:42453304 HCH2g1387 HCH-Chr2:55650887 6.70E-89 transposed
HCH2g1387 HCH-Chr2:55650887 HCH4g1190 HCH-Chr4:7956040 1.10E-102 wgd
HCH2g1387 HCH-Chr2:55650887 HCH9g1110 HCH-Chr9:13492435 1.90E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33263 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1387 - - - 0.0