Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g1390 | ATGGGATCCATGAATACAAACAATTGGCTTTCATTTCCTCTTTCACCTACTAATTCTTCATTACCAGTACATCTGCAAACAACTCAATCCCATCACTTCACTTTAGGCTTGGAGAATGATAATATGGAGATTCCATTTCAAACTCATGAGTGGAATCTGATAAATAGTCAAGGCAGCAGTGATGTTCCAAAAGTAGCAGACTTTCTAGGTGTAAACAAATCAGAAAATCAGTCAGATCTCATTGGTTTCAATGAGATTCATCCTAACGATACCGATTACGGGCTGTTTCCAATCACAAGACTTGTACCAATTCAACAAACAACCGCTAGTATTAATGTAGATCCAACAGCAGCAGCAGCATCCACTAACTATGATCTTCAAGATAATTCAAATAGTTTACAATCTTTAACCCTTTCAATGGGTAGTGGCAATGGCAAGGTCACAAACTGTGGAGAAACCAGTGGTGATAACAGTGCTAATGCTAATGTGGAAGCCACTCCCAGAAGAACTTTGGAAACTTTTGGTCAAAGAACATCAATATATCGTGGTGTAACAAGGCATAGATGGACAGGAAGGTATGAAGCTCATCTTTGGGATAATAGTTGCAGGAGAGAAGGGCAATCAAGGAAGGGTCGTCAAGTCTATTTAGGAGGGTATGATAAAGAAGAAAAGGCAGCTAGGGCTTATGATCTTGCAGCGTTGAAGTATTGGGGAACATCTACAACTACAAATTTTCCTATTAGTAACTATGAGAAGGAAGTGGATGAAATGAAGCATATGACTAGACAAGAATTTGTGGCTGCCATTAGAAGGAAAAGTAGTGGCTTTTCAAGGGGGGCATCAATGTATCGTGGAGTTACAAGGTTGTTCAATTTCTCTCTCTCTATTTACCTTCCTCTTTCCTTTTCTTGTGAGAGAAAGATATATTATATTTATGTGTTTTATAGGCACCACCAGCATGGAAGATGGCAAGCAAGGATTGGAAGAGTTGCTGGAAACAAAGATCTTTATCTGGGAACTTTCAGTACCGAAGAGGAAGCAGCAGAAGCTTATGACATTGCAGCCATTAAATTCAGAGGGCTAAATGCAGTTACTAACTTTGACATGAGCAGATATGATGTCAAGAGTATTTTAGAGAGCAATACGCTTCCAATCGGCGGCGGGGCAGCGAAACGCCTCAAGGAAGCACAGGCCATTGAATCATCAAGAAAAAGAGAGGAAATGATGGCTCTTGGATCAAGCTTTCAGTATGGCAGTAGCAGCAGCAGCTCCAGCAGGCTTCACCAAGCTGCTTACCCTCTTTTACAACAAAGCAACATGGATCAGCAATTGCAAACTCAACCATTACTTACCCTTCAAAACCATGATATTTCTCATTACACCCACCAAGATCCATCCTCATTTCATCACCAGAATTACATGCAAACTCAGCTCCAATTGCACCACCAGCAATCTGGGGCAGGAGGTAATTCTTACAACAATATCCAAAGTAGCCACCAGAGTCATCAGTTTTACAATAACTATTTACAGAATCATCCTGCTTTGCTTCATGGGATGATGAATATGGGTGGTGGTGCTTCTTCATCCGTGTTGGAAAACAGTAATGGGATAGCAAGTGGGAATTATAACCACAACAACAATGGAGTTGGAGGGTATCTTGGAAATGCATTTGGCATGGCTTCTAATTCTACCACCGCCACCGATGCGTCTAACGTCGGAGGATCGGCGGAAGAATACACATTGGTGAAAGTTGATTATGATATGCCTTCTGGGGGTTATGGGAGCTGGTCTGGTGATTCAGTTCAGGGTTCAAACACTGGAGTCTTTTCAATGTGGAATGACTGA | 1845 | 41.41 | MGSMNTNNWLSFPLSPTNSSLPVHLQTTQSHHFTLGLENDNMEIPFQTHEWNLINSQGSSDVPKVADFLGVNKSENQSDLIGFNEIHPNDTDYGLFPITRLVPIQQTTASINVDPTAAAASTNYDLQDNSNSLQSLTLSMGSGNGKVTNCGETSGDNSANANVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRLFNFSLSIYLPLSFSCERKIYYIYVFYRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKREEMMALGSSFQYGSSSSSSSRLHQAAYPLLQQSNMDQQLQTQPLLTLQNHDISHYTHQDPSSFHHQNYMQTQLQLHHQQSGAGGNSYNNIQSSHQSHQFYNNYLQNHPALLHGMMNMGGGASSSVLENSNGIASGNYNHNNNGVGGYLGNAFGMASNSTTATDASNVGGSAEEYTLVKVDYDMPSGGYGSWSGDSVQGSNTGVFSMWND | 614 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 55674648 | 55677487 | + | evm.model.ptg000010l.114 | HCH2g1390 | 540615 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g1390 | 614 | CDD | AP2 | 311 | 370 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g1390 | 614 | Gene3D | AP2/ERF domain | 310 | 370 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g1390 | 614 | Gene3D | AP2/ERF domain | 180 | 248 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g1390 | 614 | ProSiteProfiles | AP2/ERF domain profile. | 180 | 246 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g1390 | 614 | PRINTS | Ethylene responsive element binding protein signature | 181 | 192 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g1390 | 614 | PRINTS | Ethylene responsive element binding protein signature | 228 | 248 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g1390 | 614 | CDD | AP2 | 179 | 248 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g1390 | 614 | SMART | rav1_2 | 180 | 252 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g1390 | 614 | SMART | rav1_2 | 311 | 374 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g1390 | 614 | Pfam | AP2 domain | 181 | 238 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g1390 | 614 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 129 | 473 | - | - | |
HCH2g1390 | 614 | SUPERFAMILY | DNA-binding domain | 316 | 370 | IPR016177 | GO:0003677(InterPro) | |
HCH2g1390 | 614 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 179 | 248 | - | - | |
HCH2g1390 | 614 | SUPERFAMILY | DNA-binding domain | 179 | 248 | IPR016177 | GO:0003677(InterPro) | |
HCH2g1390 | 614 | ProSiteProfiles | AP2/ERF domain profile. | 282 | 368 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0603 | HCH-Chr10:4896967 | HCH2g1390 | HCH-Chr2:55674648 | 1.80E-105 | dispersed | |
HCH11g0766 | HCH-Chr11:37185694 | HCH2g1390 | HCH-Chr2:55674648 | 1.30E-94 | dispersed | |
HCH2g1390 | HCH-Chr2:55674648 | HCH6g0075 | HCH-Chr6:918144 | 1.50E-89 | dispersed | |
HCH2g1390 | HCH-Chr2:55674648 | HCH8g1037 | HCH-Chr8:46330493 | 7.70E-94 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33264 | PF00847 | AP2 | 1.10E-12 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH2g1390 | K09285 | - | rcu:8267590 | 774.237 |