Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1390 ATGGGATCCATGAATACAAACAATTGGCTTTCATTTCCTCTTTCACCTACTAATTCTTCATTACCAGTACATCTGCAAACAACTCAATCCCATCACTTCACTTTAGGCTTGGAGAATGATAATATGGAGATTCCATTTCAAACTCATGAGTGGAATCTGATAAATAGTCAAGGCAGCAGTGATGTTCCAAAAGTAGCAGACTTTCTAGGTGTAAACAAATCAGAAAATCAGTCAGATCTCATTGGTTTCAATGAGATTCATCCTAACGATACCGATTACGGGCTGTTTCCAATCACAAGACTTGTACCAATTCAACAAACAACCGCTAGTATTAATGTAGATCCAACAGCAGCAGCAGCATCCACTAACTATGATCTTCAAGATAATTCAAATAGTTTACAATCTTTAACCCTTTCAATGGGTAGTGGCAATGGCAAGGTCACAAACTGTGGAGAAACCAGTGGTGATAACAGTGCTAATGCTAATGTGGAAGCCACTCCCAGAAGAACTTTGGAAACTTTTGGTCAAAGAACATCAATATATCGTGGTGTAACAAGGCATAGATGGACAGGAAGGTATGAAGCTCATCTTTGGGATAATAGTTGCAGGAGAGAAGGGCAATCAAGGAAGGGTCGTCAAGTCTATTTAGGAGGGTATGATAAAGAAGAAAAGGCAGCTAGGGCTTATGATCTTGCAGCGTTGAAGTATTGGGGAACATCTACAACTACAAATTTTCCTATTAGTAACTATGAGAAGGAAGTGGATGAAATGAAGCATATGACTAGACAAGAATTTGTGGCTGCCATTAGAAGGAAAAGTAGTGGCTTTTCAAGGGGGGCATCAATGTATCGTGGAGTTACAAGGTTGTTCAATTTCTCTCTCTCTATTTACCTTCCTCTTTCCTTTTCTTGTGAGAGAAAGATATATTATATTTATGTGTTTTATAGGCACCACCAGCATGGAAGATGGCAAGCAAGGATTGGAAGAGTTGCTGGAAACAAAGATCTTTATCTGGGAACTTTCAGTACCGAAGAGGAAGCAGCAGAAGCTTATGACATTGCAGCCATTAAATTCAGAGGGCTAAATGCAGTTACTAACTTTGACATGAGCAGATATGATGTCAAGAGTATTTTAGAGAGCAATACGCTTCCAATCGGCGGCGGGGCAGCGAAACGCCTCAAGGAAGCACAGGCCATTGAATCATCAAGAAAAAGAGAGGAAATGATGGCTCTTGGATCAAGCTTTCAGTATGGCAGTAGCAGCAGCAGCTCCAGCAGGCTTCACCAAGCTGCTTACCCTCTTTTACAACAAAGCAACATGGATCAGCAATTGCAAACTCAACCATTACTTACCCTTCAAAACCATGATATTTCTCATTACACCCACCAAGATCCATCCTCATTTCATCACCAGAATTACATGCAAACTCAGCTCCAATTGCACCACCAGCAATCTGGGGCAGGAGGTAATTCTTACAACAATATCCAAAGTAGCCACCAGAGTCATCAGTTTTACAATAACTATTTACAGAATCATCCTGCTTTGCTTCATGGGATGATGAATATGGGTGGTGGTGCTTCTTCATCCGTGTTGGAAAACAGTAATGGGATAGCAAGTGGGAATTATAACCACAACAACAATGGAGTTGGAGGGTATCTTGGAAATGCATTTGGCATGGCTTCTAATTCTACCACCGCCACCGATGCGTCTAACGTCGGAGGATCGGCGGAAGAATACACATTGGTGAAAGTTGATTATGATATGCCTTCTGGGGGTTATGGGAGCTGGTCTGGTGATTCAGTTCAGGGTTCAAACACTGGAGTCTTTTCAATGTGGAATGACTGA 1845 41.41 MGSMNTNNWLSFPLSPTNSSLPVHLQTTQSHHFTLGLENDNMEIPFQTHEWNLINSQGSSDVPKVADFLGVNKSENQSDLIGFNEIHPNDTDYGLFPITRLVPIQQTTASINVDPTAAAASTNYDLQDNSNSLQSLTLSMGSGNGKVTNCGETSGDNSANANVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRLFNFSLSIYLPLSFSCERKIYYIYVFYRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAIESSRKREEMMALGSSFQYGSSSSSSSRLHQAAYPLLQQSNMDQQLQTQPLLTLQNHDISHYTHQDPSSFHHQNYMQTQLQLHHQQSGAGGNSYNNIQSSHQSHQFYNNYLQNHPALLHGMMNMGGGASSSVLENSNGIASGNYNHNNNGVGGYLGNAFGMASNSTTATDASNVGGSAEEYTLVKVDYDMPSGGYGSWSGDSVQGSNTGVFSMWND 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55674648 55677487 + evm.model.ptg000010l.114 HCH2g1390 540615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1390 614 CDD AP2 311 370 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1390 614 Gene3D AP2/ERF domain 310 370 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1390 614 Gene3D AP2/ERF domain 180 248 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1390 614 ProSiteProfiles AP2/ERF domain profile. 180 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1390 614 PRINTS Ethylene responsive element binding protein signature 181 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1390 614 PRINTS Ethylene responsive element binding protein signature 228 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1390 614 CDD AP2 179 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1390 614 SMART rav1_2 180 252 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1390 614 SMART rav1_2 311 374 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1390 614 Pfam AP2 domain 181 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g1390 614 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 129 473 - -
HCH2g1390 614 SUPERFAMILY DNA-binding domain 316 370 IPR016177 GO:0003677(InterPro)
HCH2g1390 614 FunFam AP2-like ethylene-responsive transcription factor ANT 179 248 - -
HCH2g1390 614 SUPERFAMILY DNA-binding domain 179 248 IPR016177 GO:0003677(InterPro)
HCH2g1390 614 ProSiteProfiles AP2/ERF domain profile. 282 368 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0603 HCH-Chr10:4896967 HCH2g1390 HCH-Chr2:55674648 1.80E-105 dispersed
HCH11g0766 HCH-Chr11:37185694 HCH2g1390 HCH-Chr2:55674648 1.30E-94 dispersed
HCH2g1390 HCH-Chr2:55674648 HCH6g0075 HCH-Chr6:918144 1.50E-89 dispersed
HCH2g1390 HCH-Chr2:55674648 HCH8g1037 HCH-Chr8:46330493 7.70E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33264 PF00847 AP2 1.10E-12 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1390 K09285 - rcu:8267590 774.237