Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g1391 | ATGGATTTGGCAAATCCTGAGCCACCACAGCTCAATCTCGACAACCTCAAAGCCATCAAAATCCTCGGCAAAGGAGCCATGGGCACCGTTTTCCTCGTCCACGACCACATTTCCAACACCCCCTTGGCTCTCAAAGTCGTCGAAAAAGCCTCCTTCATTTCCAAGCTCGACGCAGAACGAAGAGCCCGTTGGGAAATTCACGTTCTTGCTCGTTTCTCAAAACCCCAACACCCTTTCCTTCCTCACATTCTCGGTTCCTTCGAATCCCATGATTTCTTAGCATGGGCTGTTCCGTACTGCCACGGTGGCGATCTTAACGTCTTGCGTTACCGACAAATAGACCATGTTTTCTCTCCTCCCGTCATTCGGTTTTATGTAGCTGAAATCGTCTGCGCTCTCGACCACCTCCATTCCATGGACATCGTTTACAGAGATTTAAAGCCTGAGAATGTTTTAATCCAACAATCAGGTCACGTGACTCTCACGGATTTCGACTTGTCGCGTAATTTAATACGTCGTACGGTTCATAATAATGACGATCGTGTTCATGTTGTTTCTCAAGATCCTGTTCCGGTTCGGCAAAAACATCGCAGAAACTACACGCGTTGGATCTTGTCGGATGGTAAAACCAAAACCGGTTTGAGAAAAGCCAAATCGGCTCGAGTCAGTCCAGTGAGCAGGAGGAAACCGAGTTTCGTGAACGGGGAGCGGTCCAATTCGTTCGTTGGTACGGAGGAATATGTTGCTCCTGAGGTTGTCCGTGGCGATGGACATGAATTCGCCGTTGACTGGTGGGCCCTCGGAATTTTAACGTACGAATTGCTTTATGGTACGACGCCGTTTAAAGGTAAAAACCGGAAGGAAACGTTTCGGAATGTTTTGATGAAATCTCCGGAGTTTATCGGGAAACGGTCGGATTTGACGGATTTCATCGAACGGTTGTTGGAGAAAGATCCCACGCGACGGTTGGGATTTGGAAGAGGCGCGTGTGAGATTAAGGAACATCCGTTTTTTAAAGGCGTGAAGTGGGACCTATTAACGGATGTCTCACGACCGCCGTTTATTCCGTCGAGAGATGACGAATTGGACGGGATGACGGCGTCTGTTTGTGTGGATATTCGGGAGTATTTTCATAGACAGAGATTGCCGCCGTCGCTGTCGCCGTTCTCGTCTCCGTCGACCTCGTTCAGTTGTCAGAATAATAACGTATCGTTAACGGAGTTCTGA | 1227 | 48.49 | MDLANPEPPQLNLDNLKAIKILGKGAMGTVFLVHDHISNTPLALKVVEKASFISKLDAERRARWEIHVLARFSKPQHPFLPHILGSFESHDFLAWAVPYCHGGDLNVLRYRQIDHVFSPPVIRFYVAEIVCALDHLHSMDIVYRDLKPENVLIQQSGHVTLTDFDLSRNLIRRTVHNNDDRVHVVSQDPVPVRQKHRRNYTRWILSDGKTKTGLRKAKSARVSPVSRRKPSFVNGERSNSFVGTEEYVAPEVVRGDGHEFAVDWWALGILTYELLYGTTPFKGKNRKETFRNVLMKSPEFIGKRSDLTDFIERLLEKDPTRRLGFGRGACEIKEHPFFKGVKWDLLTDVSRPPFIPSRDDELDGMTASVCVDIREYFHRQRLPPSLSPFSSPSTSFSCQNNNVSLTEF | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 55685336 | 55686562 | + | evm.model.ptg000010l.113 | HCH2g1391 | 540616 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g1391 | 408 | PANTHER | FLIPPASE KINASE 1-RELATED | 10 | 359 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
HCH2g1391 | 408 | SMART | serkin_6 | 16 | 338 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1391 | 408 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 103 | - | - | |
HCH2g1391 | 408 | ProSiteProfiles | Protein kinase domain profile. | 16 | 338 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1391 | 408 | FunFam | Serine/threonine-protein kinase OXI1 | 104 | 172 | - | - | |
HCH2g1391 | 408 | FunFam | Serine/threonine-protein kinase OXI1 | 236 | 357 | - | - | |
HCH2g1391 | 408 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 45 | IPR017441 | GO:0005524(InterPro) | |
HCH2g1391 | 408 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 397 | IPR011009 | - | |
HCH2g1391 | 408 | Gene3D | Transferase(Phosphotransferase) domain 1 | 237 | 357 | - | - | |
HCH2g1391 | 408 | Gene3D | Transferase(Phosphotransferase) domain 1 | 104 | 174 | - | - | |
HCH2g1391 | 408 | Pfam | Protein kinase domain | 18 | 174 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1391 | 408 | Pfam | Protein kinase domain | 234 | 338 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g1391 | 408 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 141 | 153 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g1391 | HCH-Chr2:55685336 | HCH9g0508 | HCH-Chr9:3243154 | 5.20E-62 | dispersed | |
HCH5g1047 | HCH-Chr5:12511927 | HCH2g1391 | HCH-Chr2:55685336 | 1.10E-75 | transposed | |
HCH2g1391 | HCH-Chr2:55685336 | HCH9g1115 | HCH-Chr9:13874943 | 6.20E-15 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81359 | PF00069 | Pkinase | 1.20E-31 | CL0016 | HCH | PK |
Pathway information
