Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1391 ATGGATTTGGCAAATCCTGAGCCACCACAGCTCAATCTCGACAACCTCAAAGCCATCAAAATCCTCGGCAAAGGAGCCATGGGCACCGTTTTCCTCGTCCACGACCACATTTCCAACACCCCCTTGGCTCTCAAAGTCGTCGAAAAAGCCTCCTTCATTTCCAAGCTCGACGCAGAACGAAGAGCCCGTTGGGAAATTCACGTTCTTGCTCGTTTCTCAAAACCCCAACACCCTTTCCTTCCTCACATTCTCGGTTCCTTCGAATCCCATGATTTCTTAGCATGGGCTGTTCCGTACTGCCACGGTGGCGATCTTAACGTCTTGCGTTACCGACAAATAGACCATGTTTTCTCTCCTCCCGTCATTCGGTTTTATGTAGCTGAAATCGTCTGCGCTCTCGACCACCTCCATTCCATGGACATCGTTTACAGAGATTTAAAGCCTGAGAATGTTTTAATCCAACAATCAGGTCACGTGACTCTCACGGATTTCGACTTGTCGCGTAATTTAATACGTCGTACGGTTCATAATAATGACGATCGTGTTCATGTTGTTTCTCAAGATCCTGTTCCGGTTCGGCAAAAACATCGCAGAAACTACACGCGTTGGATCTTGTCGGATGGTAAAACCAAAACCGGTTTGAGAAAAGCCAAATCGGCTCGAGTCAGTCCAGTGAGCAGGAGGAAACCGAGTTTCGTGAACGGGGAGCGGTCCAATTCGTTCGTTGGTACGGAGGAATATGTTGCTCCTGAGGTTGTCCGTGGCGATGGACATGAATTCGCCGTTGACTGGTGGGCCCTCGGAATTTTAACGTACGAATTGCTTTATGGTACGACGCCGTTTAAAGGTAAAAACCGGAAGGAAACGTTTCGGAATGTTTTGATGAAATCTCCGGAGTTTATCGGGAAACGGTCGGATTTGACGGATTTCATCGAACGGTTGTTGGAGAAAGATCCCACGCGACGGTTGGGATTTGGAAGAGGCGCGTGTGAGATTAAGGAACATCCGTTTTTTAAAGGCGTGAAGTGGGACCTATTAACGGATGTCTCACGACCGCCGTTTATTCCGTCGAGAGATGACGAATTGGACGGGATGACGGCGTCTGTTTGTGTGGATATTCGGGAGTATTTTCATAGACAGAGATTGCCGCCGTCGCTGTCGCCGTTCTCGTCTCCGTCGACCTCGTTCAGTTGTCAGAATAATAACGTATCGTTAACGGAGTTCTGA 1227 48.49 MDLANPEPPQLNLDNLKAIKILGKGAMGTVFLVHDHISNTPLALKVVEKASFISKLDAERRARWEIHVLARFSKPQHPFLPHILGSFESHDFLAWAVPYCHGGDLNVLRYRQIDHVFSPPVIRFYVAEIVCALDHLHSMDIVYRDLKPENVLIQQSGHVTLTDFDLSRNLIRRTVHNNDDRVHVVSQDPVPVRQKHRRNYTRWILSDGKTKTGLRKAKSARVSPVSRRKPSFVNGERSNSFVGTEEYVAPEVVRGDGHEFAVDWWALGILTYELLYGTTPFKGKNRKETFRNVLMKSPEFIGKRSDLTDFIERLLEKDPTRRLGFGRGACEIKEHPFFKGVKWDLLTDVSRPPFIPSRDDELDGMTASVCVDIREYFHRQRLPPSLSPFSSPSTSFSCQNNNVSLTEF 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55685336 55686562 + evm.model.ptg000010l.113 HCH2g1391 540616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1391 408 PANTHER FLIPPASE KINASE 1-RELATED 10 359 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH2g1391 408 SMART serkin_6 16 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1391 408 Gene3D Phosphorylase Kinase; domain 1 14 103 - -
HCH2g1391 408 ProSiteProfiles Protein kinase domain profile. 16 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1391 408 FunFam Serine/threonine-protein kinase OXI1 104 172 - -
HCH2g1391 408 FunFam Serine/threonine-protein kinase OXI1 236 357 - -
HCH2g1391 408 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
HCH2g1391 408 SUPERFAMILY Protein kinase-like (PK-like) 13 397 IPR011009 -
HCH2g1391 408 Gene3D Transferase(Phosphotransferase) domain 1 237 357 - -
HCH2g1391 408 Gene3D Transferase(Phosphotransferase) domain 1 104 174 - -
HCH2g1391 408 Pfam Protein kinase domain 18 174 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1391 408 Pfam Protein kinase domain 234 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g1391 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1391 HCH-Chr2:55685336 HCH9g0508 HCH-Chr9:3243154 5.20E-62 dispersed
HCH5g1047 HCH-Chr5:12511927 HCH2g1391 HCH-Chr2:55685336 1.10E-75 transposed
HCH2g1391 HCH-Chr2:55685336 HCH9g1115 HCH-Chr9:13874943 6.20E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81359 PF00069 Pkinase 1.20E-31 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1391 - - - 0.0