Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1421 ATGGAGATCTCGAGCGGACGATCAAAGGGTTTCCTTTTTCTTATGATTTTTCTGATGCTTTGTGCAGCCACAAGGTCTCAGCTGACTGCAAATTTCTATAAGAATACATGTCCAAACCTTTTCAGAATTGTAAGGAGAGAAGTTCAGAATGCTTTAAAGAATGAGATGCGAATGGCCGCCTCTCTGCTTCGACTCCATTTCCACGATTGCTTTGTTAATGGGTGTGATGGATCACTACTGTTGGATGGAAATGATGGAGAGAAATTTGCACTTCCAAACCTGAACTCGGCAAGAGGGTATGAAGTTGTGGATGCAATAAAAAACGCAGTGGAAAATTCATGCAGTGGAGTTGTCTCATGTTCTGATATTCTAACCATAGCTGCTAGAGATTCTATCCTCTTGAGTGGAGGACCAACATGGAAGGTTTTATTGGGTAGAAGAGATGGACTGATAGCGAATAAGACAGGGGCAGAGACACTGCCCTCTCCATTTGAGACACTGGATGATCTTTTCACAAAGTTCACCATTCTTGGCTTCGATGTCAGAGATATGGTTGCTCTATCTGGTGCCCACACAATTGGATTAGCAAGGTGTGGAATGTTCAGCAACAGGCTGTTCAATTTCTCAAACACTGGAGCTCCAGACACCACTATGGAGACAAACATGTTATTAGAACTTCAGAGTTTTTGTGATGACGACAGCAAGACGACAGTTTTTGATAGAAACTCTGTTGATTTATTTGACAATCATTACTTCAAGAACTTGATAAACCAAAAGGGGTTATTGGGCTCTGACCAAATCCTGTTTTCAAGCACTGAAGCCCAAACTAGAACTAAGAGTTTGGTTGAAAATTACAGTTCTAACCCCAACCTTTTCTTCTCTGACTTCGTCAATGCCATGATCAAGATGGGTAATTTATCACCTCTCACTGCCCCTGATGGACAGATTCGCAAGAATTGCAGAGTTGTTAATTCCTAA 978 41.62 MEISSGRSKGFLFLMIFLMLCAATRSQLTANFYKNTCPNLFRIVRREVQNALKNEMRMAASLLRLHFHDCFVNGCDGSLLLDGNDGEKFALPNLNSARGYEVVDAIKNAVENSCSGVVSCSDILTIAARDSILLSGGPTWKVLLGRRDGLIANKTGAETLPSPFETLDDLFTKFTILGFDVRDMVALSGAHTIGLARCGMFSNRLFNFSNTGAPDTTMETNMLLELQSFCDDDSKTTVFDRNSVDLFDNHYFKNLINQKGLLGSDQILFSSTEAQTRTKSLVENYSSNPNLFFSDFVNAMIKMGNLSPLTAPDGQIRKNCRVVNS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55919412 55921297 + evm.model.ptg000010l.83 HCH2g1421 540646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1421 325 Gene3D - 33 324 - -
HCH2g1421 325 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 CDD secretory_peroxidase 27 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH2g1421 325 FunFam Peroxidase 161 303 - -
HCH2g1421 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
HCH2g1421 325 Pfam Peroxidase 44 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 FunFam Peroxidase 31 169 - -
HCH2g1421 325 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
HCH2g1421 325 Gene3D Peroxidase, domain 2 161 306 - -
HCH2g1421 325 ProSiteProfiles Plant heme peroxidase family profile. 27 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 PANTHER PEROXIDASE 72-RELATED 14 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1421 325 SUPERFAMILY Heme-dependent peroxidases 27 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0262 HCH-Chr14:30532058 HCH2g1421 HCH-Chr2:55919412 2.80E-87 dispersed
HCH2g0395 HCH-Chr2:46876525 HCH2g1421 HCH-Chr2:55919412 4.00E-76 dispersed
HCH2g1421 HCH-Chr2:55919412 HCH2g1424 HCH-Chr2:55941354 5.90E-77 dispersed
HCH2g1421 HCH-Chr2:55919412 HCH2g1422 HCH-Chr2:55923396 6.60E-76 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1421 K00430 - csv:101211257 464.151