Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1423 ATGGCCTCGTGCAGAGTGACAGCCTTAGTGTTGGTAGTTGCTTTGATGTTTGGAGGGTCAAGTGCTGCCCTAAGCCCTCTGTTCTATGCCTTCACTTGCCCTCAGCTTCCTTTCATTGTATTAAATGTGGTTCGTCAAGCTCTACTAACCGATGATCGTGCAGCTGCTAAACTCATTCGCCTCCATTTCCATGATTGCTTCGTCAATGGTTGTGACGGTTCTGTATTGCTAGAGAACGCACCTGGGATTGAGAGTGAATTAGATGCAGCTCCTAATGCAGGAATACAAGGTCTCAACATTGTTGATGACATCAAAACTGCTCTCGAAAACTCTTGCCCCGGTGTTGTTTCCTGCGCCGACATCTTAGCCCTTTCTTCTCAAATTTCTGTTGTTCTGTCAGGAGGACCGGCTTGGTTAGTTTTCTTGGGAAGAAAAGACAGCAGGACAGCCAATAGAACAGCCGCCGCTAACCTTCCTAGTCCCTTTGAAACTCTTGACCAACTTAAAGCCAAATTTGCTGTTCTTGGCTTTGATTCCAAAGATCTTGTCACTTTATCCGGAGCACACACATTCGGTCGATCAAGATGCCTATTCTTCACGCACCGGTTTGACAACTTCAACAGCACAGGCAGGCCCGATCCGTCACTTGATCCAGTTTACAGAGAACAGCTTCGTCAAGCCTGTACGACACCACAAACAAGAGTAAATTTCGACCCAACGACACCAAACCAATTCGACAAGAACTACTACACAAACCTGCGTAGTCTTCGTGGGCTTCTCCAAAGTGATCAAGAACTATTCTCAACTCCAGGGGCAGATACAACTGGTATTGTGAACACATTTGCAGCAAGCGAATTCCTGTTCTTTACACAATTTGGTTTTTCAATGATAAAAATGGGAAATCTTCCCCCTCCACCTGGAAGTGTAGGAGAAGTCAGATTGAACTGTAGGAGGGTTAATCCAGTTTCTGGTCATGATGTTATGTAA 987 45.49 MASCRVTALVLVVALMFGGSSAALSPLFYAFTCPQLPFIVLNVVRQALLTDDRAAAKLIRLHFHDCFVNGCDGSVLLENAPGIESELDAAPNAGIQGLNIVDDIKTALENSCPGVVSCADILALSSQISVVLSGGPAWLVFLGRKDSRTANRTAAANLPSPFETLDQLKAKFAVLGFDSKDLVTLSGAHTFGRSRCLFFTHRFDNFNSTGRPDPSLDPVYREQLRQACTTPQTRVNFDPTTPNQFDKNYYTNLRSLRGLLQSDQELFSTPGADTTGIVNTFAASEFLFFTQFGFSMIKMGNLPPPPGSVGEVRLNCRRVNPVSGHDVM 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55929710 55931179 + evm.model.ptg000010l.81 HCH2g1423 540648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1423 328 PANTHER PEROXIDASE 72-RELATED 10 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
HCH2g1423 328 SUPERFAMILY Heme-dependent peroxidases 24 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 Pfam Peroxidase 41 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 FunFam Peroxidase 27 171 - -
HCH2g1423 328 Gene3D Peroxidase, domain 2 159 299 - -
HCH2g1423 328 ProSiteProfiles Plant heme peroxidase family profile. 23 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
HCH2g1423 328 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1423 328 Gene3D - 28 320 - -
HCH2g1423 328 FunFam Peroxidase 159 299 - -
HCH2g1423 328 CDD secretory_peroxidase 24 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1423 HCH-Chr2:55929710 HCH5g0711 HCH-Chr5:5156946 2.90E-108 dispersed
HCH2g1422 HCH-Chr2:55923396 HCH2g1423 HCH-Chr2:55929710 9.40E-123 tandem
HCH2g1423 HCH-Chr2:55929710 HCH2g1424 HCH-Chr2:55941354 1.20E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1423 K00430 - csv:101211752 509.99