Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1424 ATGGGCTCTTTCAAACTTATATCCTCCCTCTTGTTTGTTGGTCTTTTCTTTGGAGGCTCTTTCGCTCAACTCACCACTGATTTTTACGACCGAACTTGCCCTCGTTTGCCCAACATTGTTCGTCGTGAAGTCAAGAAAGGTATGGAGACTGACGTCCGTATTGGTGCCAAACTCATCCGCCTTCATTTCCATGATTGCTTCGTCAATGGTTGTGATGGATCTGTTTTGTTAGAAAATGCTCCAGGCATAGACAGTGAACAAAACTCACCAGGAAATCAAGGAATACAAGGATTTGAAATTGTGGATGATATCAAAGCTGCGGTGGAAAGTGCTTGTCCTGGTATTGTTTCATGTGCCGACATCCTCGCTCAAGCATCTAAGGATTCTGTTGACGTGCAAGGAGGACCTAGTTGGAGAGTTTTGTATGGAAGAAGAGATAGCAGAATAGCAAATAGAAGTGGGGCTGACTCTGGCCTTGCTGCTCCTTTTGAAACTCTTCCACAACTAAAAGCCAAGTTTGCTGCTGTTGGCCTTAGTACCCTTGATCTTGTTGCTTTATCTGGAGCACATACGTTTGGAAGGTCAAGATGTCAGTTTTTCAGTGACCGTTTATCAGATTTCAACGAGACAGGAAGACCAGATCCAACGTTGGATCCAGCGTATAGAAGAGTGTTACAACAAATATGTGTAAATGGAGAGGTAAGAGCCAATTTTGACCCAACAACACCAGACACGTTTGACAAAAATTACTACACAAACCTTCAAGCTAACAAAGGACTTCTCCAAAGTGATCAAGAACTGTTTTCAACTCCTGGGGCAGATACTATCGCAATTGTTAACAGTTTTGCAAGCAGAGAAGGAACTTTCTTCAAGGAATTTCGTCAGTCTATGATAAATATGGGAAATATTAAACCTTTAACGGGAAACAGAGGAGAAATTAGAAGACACTGCAGGAGGGTTAACGTTAATCTTAATAATATGGGAGAAGGCGAAGGCCATGATGTTATGTAA 1011 42.04 MGSFKLISSLLFVGLFFGGSFAQLTTDFYDRTCPRLPNIVRREVKKGMETDVRIGAKLIRLHFHDCFVNGCDGSVLLENAPGIDSEQNSPGNQGIQGFEIVDDIKAAVESACPGIVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRIANRSGADSGLAAPFETLPQLKAKFAAVGLSTLDLVALSGAHTFGRSRCQFFSDRLSDFNETGRPDPTLDPAYRRVLQQICVNGEVRANFDPTTPDTFDKNYYTNLQANKGLLQSDQELFSTPGADTIAIVNSFASREGTFFKEFRQSMINMGNIKPLTGNRGEIRRHCRRVNVNLNNMGEGEGHDVM 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55941354 55942785 + evm.model.ptg000010l.80 HCH2g1424 540649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1424 336 FunFam Peroxidase 27 172 - -
HCH2g1424 336 PANTHER PEROXIDASE 72-RELATED 15 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
HCH2g1424 336 Gene3D Peroxidase, domain 2 160 300 - -
HCH2g1424 336 FunFam Peroxidase 160 300 - -
HCH2g1424 336 ProSiteProfiles Plant heme peroxidase family profile. 23 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
HCH2g1424 336 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 Pfam Peroxidase 40 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 SUPERFAMILY Heme-dependent peroxidases 23 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 Gene3D - 28 321 - -
HCH2g1424 336 CDD secretory_peroxidase 23 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH2g1424 336 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g1424 336 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1421 HCH-Chr2:55919412 HCH2g1424 HCH-Chr2:55941354 5.90E-77 dispersed
HCH2g1422 HCH-Chr2:55923396 HCH2g1424 HCH-Chr2:55941354 6.50E-124 dispersed
HCH2g1424 HCH-Chr2:55941354 HCH5g0711 HCH-Chr5:5156946 3.30E-115 dispersed
HCH2g1423 HCH-Chr2:55929710 HCH2g1424 HCH-Chr2:55941354 1.20E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1424 K00430 - csv:101217543 518.079